BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.4.cl.453.Contig1
(1776 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16405.1 68415.m01878 transducin family protein / WD-40 ... 3513 0.0
At5g48330.1 68418.m05970 regulator of chromosome condensati... 38 0.25
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-contai... 38 0.25
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-contai... 38 0.25
At4g24000.1 68417.m03449 cellulose synthase family protein ... 38 0.25
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat family protein
contains 7 WD-40 repeats (PF00400); similar to WD-repeat
protein 13 (SP:Q9H1Z4) [Homo sapiens]
Length = 1776
Score = 3513 bits (1772), Expect = 0.0
Identities = 1775/1776 (99%)
Strand = Plus / Plus
Query: 1 gttcaccagaattcagaacttgatactgatcaattgaattttcactcatcaatttgcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcaccagaattcagaacttgatactgatcaattgaattttcactcatcaatttgcaac 60
Query: 61 gatttgatctacggaggcttgacgaggtggattggagccagaggaagggcggatcatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatttgatctacggaggcttgacgaggtggattggagccagaggaagggcggatcatctc 120
Query: 121 gaagtagaagatctcgattttggatcgctcggaaaactgatcaaatggaggagaaaaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaagtagaagatctcgattttggatcgctcggaaaactgatcaaatggaggagaaaaacg 180
Query: 181 gatcatcagaggtagagatcggagagaaagacgaaacgaagaagcaatcaaaggatcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatcatcagaggtagagatcggagagaaagacgaaacgaagaagcaatcaaaggatcttg 240
Query: 241 agttcttaagctgtatgatgcagccaaaaacagctgattcagatccacactacatcggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agttcttaagctgtatgatgcagccaaaaacagctgattcagatccacactacatcggaa 300
Query: 301 tccgccggattcttcttcatcggaaagctgattctggcgttatctctcgccgttatgatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccgccggattcttcttcatcggaaagctgattctggcgttatctctcgccgttatgatt 360
Query: 361 ggagatgcaatggaaaaggatatgttgcttatcgtaatttcattagcaaacctagaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggagatgcaatggaaaaggatatgttgcttatcgtaatttcattagcaaacctagaaaat 420
Query: 421 gggagaatctgcgaacgcctagtctcttaagtagtccaggaaacagtggtcgatggttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggagaatctgcgaacgcctagtctcttaagtagtccaggaaacagtggtcgatggttac 480
Query: 481 cttctccaagtcctctctcgcatcaatttgaagctgaaagctttacttctagtagagatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttctccaagtcctctctcgcatcaatttgaagctgaaagctttacttctagtagagatt 540
Query: 541 taaggagtgtgaatcaggtttcaagtcgtagagcgagttttagctcaagtttgagtgatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taaggagtgtgaatcaggtttcaagtcgtagagcgagttttagctcaagtttgagtgatg 600
Query: 601 gtgataattcatatcgtcgtggtggtgttgaacatgcttattcttttgttggaatgcatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtgataattcatatcgtcgtggtggtgttgaacatgcttattcttttgttggaatgcatt 660
Query: 661 gcatcttcgatcaatgcaaatcttctgttactgttctcaagtttggtcatatgagttctg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gcatcttcgatcaatgcaaatcttctgttactgttctcaagtttggtcatatgagttctg 720
Query: 721 atatacttgcatatggagcatcagatggaagcttaacagtttgtagtctcttagaagagc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atatacttgcatatggagcatcagatggaagcttaacagtttgtagtctcttagaagagc 780
Query: 781 cttctgtcctcaagcagttgacaggtcactctaaagatgtcacagattttgacttctcgt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cttctgtcctcaagcagttgacaggtcactctaaagatgtcacagattttgacttctcgt 840
Query: 841 caaacaatcaatacatcgcgtcatcatcacttgataagacaatacgagtatgggagttgt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 caaacaatcaatacatcgcgtcatcatcacttgataagacaatacgagtatgggagttgt 900
Query: 901 caagaggcgtttgtattagagttatatatggaatctctccacagtattgtatccgtttcc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 caagaggcgtttgtattagagttatatatggaatctctccacagtattgtatccgtttcc 960
Query: 961 accctgttaataacaatttcctctctgctggcaatgcaaacaaggaactcacggtgttca 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 accctgttaataacaatttcctctctgctggcaatgcaaacaaggaactcacggtgttca 1020
Query: 1021 atttcagcactgggagaattatcaaaaaactgttgtttgaggatgaggtgacatctatgg 1080
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1021 atttcagcactgggagaattattaaaaaactgttgtttgaggatgaggtgacatctatgg 1080
Query: 1081 accatgatcacactggccaaataattttctgtggagatgggcagggaactgtatattcag 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 accatgatcacactggccaaataattttctgtggagatgggcagggaactgtatattcag 1140
Query: 1141 taagcatggattcgcatacagggtcattatcccggtctcatcgtcatcgtacaaatcaca 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 taagcatggattcgcatacagggtcattatcccggtctcatcgtcatcgtacaaatcaca 1200
Query: 1201 aatctcctgtcaccactgtgaagtacagaagcttctccctcctggcatcaggccctgttc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aatctcctgtcaccactgtgaagtacagaagcttctccctcctggcatcaggccctgttc 1260
Query: 1261 tgctcacatgtactcaggacggaaacttgagtttctttagtgttgcccttcagataaaag 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 tgctcacatgtactcaggacggaaacttgagtttctttagtgttgcccttcagataaaag 1320
Query: 1321 gttatttgactttgcgttgctccctcaaattagccccgcgaatacacagaatccaagcat 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 gttatttgactttgcgttgctccctcaaattagccccgcgaatacacagaatccaagcat 1380
Query: 1381 cgttttgcccgctattatcactagagaaaggagaatacatagttgctggaagcgaagact 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 cgttttgcccgctattatcactagagaaaggagaatacatagttgctggaagcgaagact 1440
Query: 1441 cgaatgtctacttctatgatctaaccaaaccgaagcacacatgtgtaaacaagctacagg 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 cgaatgtctacttctatgatctaaccaaaccgaagcacacatgtgtaaacaagctacagg 1500
Query: 1501 gtcacaggtttccagtaatgtgtgttgcgtggaaccatggggagaacttgttggcttcgt 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gtcacaggtttccagtaatgtgtgttgcgtggaaccatggggagaacttgttggcttcgt 1560
Query: 1561 ctgatttctatggtgttgtcattgtatggaaaagagcaaagacaagctcataaggtttgt 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 ctgatttctatggtgttgtcattgtatggaaaagagcaaagacaagctcataaggtttgt 1620
Query: 1621 ctataatattataaatgaatctaaatccgtcatttttgccacaaaggctttgggtttggc 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 ctataatattataaatgaatctaaatccgtcatttttgccacaaaggctttgggtttggc 1680
Query: 1681 atcatctctgtatcgctaatctcaaaactgtgtcaatttagtttcccatctcttataaag 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 atcatctctgtatcgctaatctcaaaactgtgtcaatttagtttcccatctcttataaag 1740
Query: 1741 atatagttctgtgacactcctatgcacagattcaat 1776
||||||||||||||||||||||||||||||||||||
Sbjct: 1741 atatagttctgtgacactcctatgcacagattcaat 1776
>At5g48330.1 68418.m05970 regulator of chromosome condensation (RCC1) family
protein contains Pfam PF00415:Regulator of chromosome
condensation (RCC1) domain (5 copies); similar to
UVB-resistance protein UVR8 (GI:5478530) {Arabidopsis
thaliana)
Length = 1533
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 527 ttctagtagagatttaaggagtg 549
|||||||||||||| ||||||||
Sbjct: 413 ttctagtagagattcaaggagtg 435
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing protein low
similarity to tumor-rejection antigen SART3 [Mus
musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 2709
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 266 aaaaacagctgattcagat 284
|||||||||||||||||||
Sbjct: 1969 aaaaacagctgattcagat 1987
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing protein low
similarity to tumor-rejection antigen SART3 [Mus
musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 2706
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 266 aaaaacagctgattcagat 284
|||||||||||||||||||
Sbjct: 1969 aaaaacagctgattcagat 1987
>At4g24000.1 68417.m03449 cellulose synthase family protein similar to cellulose
synthase from Gossypium hirsutum [gi:1706956], cellulose
synthase-5 from Zea mays [gi:9622882]
Length = 2434
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1673 ggtttggcatcatctctgt 1691
|||||||||||||||||||
Sbjct: 875 ggtttggcatcatctctgt 857
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,197
Number of Sequences: 29161
Number of extensions: 57197
Number of successful extensions: 1251
Number of sequences better than 10.0: 28
length of query: 1776
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1758
effective length of database: 43,533,334
effective search space: 76531601172
effective search space used: 76531601172
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)