BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.4.cl.426.Contig1
         (2192 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18420.1  68414.m02300 expressed protein contains Pfam pr...   839   0.0  
At3g18440.1  68416.m02344 expressed protein contains Pfam pr...    50   8e-05
At2g17470.1  68415.m02017 expressed protein contains Pfam pr...    44   0.005
At5g23890.1  68418.m02806 expressed protein weak similarity ...    42   0.020
At4g27420.1  68417.m03941 ABC transporter family protein D.m...    38   0.31 
>At1g18420.1 68414.m02300 expressed protein contains Pfam profile PF01027:
            Uncharacterized protein family UPF0005
          Length = 1746

 Score =  839 bits (423), Expect = 0.0
 Identities = 423/423 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    agctttgacactgagctcatcgtacgcattcacgagattctcaagcctcgcgacgaattc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 agctttgacactgagctcatcgtacgcattcacgagattctcaagcctcgcgacgaattc 1660

                                                                        
Query: 61   gatcagtagcgaagcgaacgtagctagagaaagattactcgcgctctcgtacatttttcc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 gatcagtagcgaagcgaacgtagctagagaaagattactcgcgctctcgtacatttttcc 1600

                                                                        
Query: 121  cggctctcccagtggtggctgtaacatacttcccggcgtaatagagatccggctaggcca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 cggctctcccagtggtggctgtaacatacttcccggcgtaatagagatccggctaggcca 1540

                                                                        
Query: 181  cgacggctgtttatgtatcatcgtccttgattgcaggtaaggaagcatcgtcgccgaact 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 cgacggctgtttatgtatcatcgtccttgattgcaggtaaggaagcatcgtcgccgaact 1480

                                                                        
Query: 241  caagttagctgcagttgtaacatcatcccaattcttcggtggacgaagagtggcttcact 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 caagttagctgcagttgtaacatcatcccaattcttcggtggacgaagagtggcttcact 1420

                                                                        
Query: 301  ctgagatttatgagccaagatccgacttagatcagagtcgagattcgagattttttgttc 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 ctgagatttatgagccaagatccgacttagatcagagtcgagattcgagattttttgttc 1360

                                                                        
Query: 361  atcagtcaaatccctaaccctaggccggttcccgatttcccaattcttggcgttcacgag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 atcagtcaaatccctaaccctaggccggttcccgatttcccaattcttggcgttcacgag 1300

               
Query: 421  aag 423
            |||
Sbjct: 1299 aag 1297

 Score =  545 bits (275), Expect = e-154
 Identities = 275/275 (100%)
 Strand = Plus / Minus

                                                                        
Query: 899  aaccttccagagaagtcgctacgttcacaaagttcttggcgaccaagttatggagatctt 958
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  aaccttccagagaagtcgctacgttcacaaagttcttggcgaccaagttatggagatctt 764

                                                                        
Query: 959  ccccagcccatatgggataaatgcaagtattcactatgaggccaacactggcaccaagag 1018
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  ccccagcccatatgggataaatgcaagtattcactatgaggccaacactggcaccaagag 704

                                                                        
Query: 1019 ctatcagaaggaaccttgaaacagctgtttccatgaattcccctgttttgtatcctgaca 1078
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  ctatcagaaggaaccttgaaacagctgtttccatgaattcccctgttttgtatcctgaca 644

                                                                        
Query: 1079 ctattacgtagcaataggtcagcaagaacacccggaatccgtactcgtaaggcttcatcg 1138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  ctattacgtagcaataggtcagcaagaacacccggaatccgtactcgtaaggcttcatcg 584

                                               
Query: 1139 ttggatatagctttgcataagtcgcaaaaaaggct 1173
            |||||||||||||||||||||||||||||||||||
Sbjct: 583  ttggatatagctttgcataagtcgcaaaaaaggct 549

 Score =  381 bits (192), Expect = e-104
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1434 cagagatagtggccgctgagctctaatcctgggatcttaaagaagatgaggatagaggta 1493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371  cagagatagtggccgctgagctctaatcctgggatcttaaagaagatgaggatagaggta 312

                                                                        
Query: 1494 agtgtcagagccaaacccatcttcgccgagaatatcatcttcctcgggtcagctgttccc 1553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311  agtgtcagagccaaacccatcttcgccgagaatatcatcttcctcgggtcagctgttccc 252

                                                                        
Query: 1554 atctcccatgccgtaaccaaaacatcctttaatttcttcacaacccccgtgatcttgtca 1613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251  atctcccatgccgtaaccaaaacatcctttaatttcttcacaacccccgtgatcttgtca 192

                        
Query: 1614 gagaagtagctg 1625
            ||||||||||||
Sbjct: 191  gagaagtagctg 180

 Score =  361 bits (182), Expect = 2e-98
 Identities = 182/182 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1777 ctgtaggagcagcaacggacggaagttttgtcatcgtcgttgacattggaatagcctctg 1836
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182  ctgtaggagcagcaacggacggaagttttgtcatcgtcgttgacattggaatagcctctg 123

                                                                        
Query: 1837 ctctgtaggataagcctatctctcatgctttgtcgaaacgaaccatcgaacatactacct 1896
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122  ctctgtaggataagcctatctctcatgctttgtcgaaacgaaccatcgaacatactacct 63

                                                                        
Query: 1897 cgcctgaaagatccgtcgaacatgctaccccgcctgaaagattccagctttggtgccgcc 1956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62   cgcctgaaagatccgtcgaacatgctaccccgcctgaaagattccagctttggtgccgcc 3

              
Query: 1957 at 1958
            ||
Sbjct: 2    at 1

 Score =  285 bits (144), Expect = 8e-76
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1266 ctactacaaagatgctagcagcattaaaaacatctgcccaatttccagtcatctccgata 1325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  ctactacaaagatgctagcagcattaaaaacatctgcccaatttccagtcatctccgata 491

                                                                        
Query: 1326 tccaagacatgccaagcgccagtcctcctgcggacaatgttcctagtccccggttacatc 1385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490  tccaagacatgccaagcgccagtcctcctgcggacaatgttcctagtccccggttacatc 431

                                    
Query: 1386 ctttgctaaaggtggctcctatac 1409
            ||||||||||||||||||||||||
Sbjct: 430  ctttgctaaaggtggctcctatac 407

 Score =  268 bits (135), Expect = 2e-70
 Identities = 149/151 (98%), Gaps = 2/151 (1%)
 Strand = Plus / Minus

                                                                        
Query: 512  cctggatctctgagagaatgcagccatgtaacgcccatgaccatgatagcacaatgcctc 571
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1108 cctggatctctgagagaatgcagccatgtaacgcc-atgaccatgatagcacaatgcctc 1050

                                                                        
Query: 572  aatgcaccaccctactttcacatacagtgcccatgggtatctaaaggatttgtacggtcc 631
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 aatgcaccacc-tactttcacatacagtgcccatgggtatctaaaggatttgtacggtcc 991

                                           
Query: 632  gtgtggtggctcccatgatgcaaaactcatc 662
            |||||||||||||||||||||||||||||||
Sbjct: 990  gtgtggtggctcccatgatgcaaaactcatc 960

 Score =  236 bits (119), Expect = 7e-61
 Identities = 119/119 (100%)
 Strand = Plus / Minus

                                                                       
Query: 694 attgaacggctgatctgtaaccactgtacactggatcttccgcgacagcttcatagacca 753
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 attgaacggctgatctgtaaccactgtacactggatcttccgcgacagcttcatagacca 878

                                                                      
Query: 754 gaatcctagatgggattgtatcatatgctacgcactcaagatatccgttcacacaacct 812
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaatcctagatgggattgtatcatatgctacgcactcaagatatccgttcacacaacct 819
>At3g18440.1 68416.m02344 expressed protein contains Pfam profile PF01027:
            Uncharacterized protein family UPF0005
          Length = 2005

 Score = 50.1 bits (25), Expect = 8e-05
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 602  ccatgggtatctaaaggatttgtacggtccgtgtggtggctcccatgatgcaaaactcat 661
            |||||||||  |||| || ||||| ||||| |||||||||||||||  ||| ||||||||
Sbjct: 1071 ccatgggtagttaaatgacttgtatggtccatgtggtggctcccatattgcgaaactcat 1012

             
Query: 662  c 662
            |
Sbjct: 1011 c 1011

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                       
Query: 899 aaccttccagagaagtcgctacgttcacaaagttcttggcgaccaagttatggagatctt 958
           ||||||| || |||||||| || |||| ||| |||||  |||| | |||||| ||||| |
Sbjct: 877 aaccttcaagggaagtcgcaacattcataaaattcttcacgacaaggttatgaagatcct 818

                              
Query: 959 ccccagcccatatgggata 977
           | ||||||||||| |||||
Sbjct: 817 ctccagcccatataggata 799

 Score = 42.1 bits (21), Expect = 0.020
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 512  cctggatctctgagagaatgcagcc 536
            ||||||| |||||||||||||||||
Sbjct: 1159 cctggatttctgagagaatgcagcc 1135

 Score = 34.2 bits (17), Expect = 4.8
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 792 agatatccgttcacacaacct 812
           |||||||| ||||||||||||
Sbjct: 893 agatatccattcacacaacct 873
>At2g17470.1 68415.m02017 expressed protein contains Pfam profile PF01027:
           Uncharacterized protein family UPF0005
          Length = 1684

 Score = 44.1 bits (22), Expect = 0.005
 Identities = 59/70 (84%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 512 cctggatctctgagagaatgcagccatgtaacgcccatgaccatgatagcacaatgcctc 571
           |||| |||||||| || ||||| ||||||| |||| |||||  ||| |||||||||||| 
Sbjct: 949 cctgtatctctgaaagtatgcaaccatgtatcgcc-atgacggtgaaagcacaatgcctt 891

                     
Query: 572 aatgcaccac 581
           | ||||||||
Sbjct: 890 actgcaccac 881

 Score = 36.2 bits (18), Expect = 1.2
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                     
Query: 946 ttatggagatcttccccagcccatat 971
           ||||||||||| ||||| ||||||||
Sbjct: 620 ttatggagatcctccccggcccatat 595

 Score = 34.2 bits (17), Expect = 4.8
 Identities = 35/41 (85%)
 Strand = Plus / Minus

                                                     
Query: 1096 gtcagcaagaacacccggaatccgtactcgtaaggcttcat 1136
            |||| ||||||||||| |||| |||| || || ||||||||
Sbjct: 470  gtcaacaagaacaccctgaatgcgtattcatatggcttcat 430
>At5g23890.1 68418.m02806 expressed protein weak similarity to SP|P12957 Caldesmon
            (CDM) {Gallus gallus}
          Length = 3135

 Score = 42.1 bits (21), Expect = 0.020
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 2081 gatggtgtcatgactgatgaa 2101
            |||||||||||||||||||||
Sbjct: 669  gatggtgtcatgactgatgaa 689
>At4g27420.1 68417.m03941 ABC transporter family protein D.melanogaster P element
            CaSpeR-1 gene (white protein),PID:g870996
          Length = 2155

 Score = 38.2 bits (19), Expect = 0.31
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1410 aaaaaacaagagaagatca 1428
            |||||||||||||||||||
Sbjct: 478  aaaaaacaagagaagatca 496
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,905
Number of Sequences: 29161
Number of extensions: 64905
Number of successful extensions: 1416
Number of sequences better than 10.0: 29
length of query: 2192
length of database: 44,058,232
effective HSP length: 18
effective length of query: 2174
effective length of database: 43,533,334
effective search space: 94641468116
effective search space used: 94641468116
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)