BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.4.cl.426.Contig1
(2192 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18420.1 68414.m02300 expressed protein contains Pfam pr... 839 0.0
At3g18440.1 68416.m02344 expressed protein contains Pfam pr... 50 8e-05
At2g17470.1 68415.m02017 expressed protein contains Pfam pr... 44 0.005
At5g23890.1 68418.m02806 expressed protein weak similarity ... 42 0.020
At4g27420.1 68417.m03941 ABC transporter family protein D.m... 38 0.31
>At1g18420.1 68414.m02300 expressed protein contains Pfam profile PF01027:
Uncharacterized protein family UPF0005
Length = 1746
Score = 839 bits (423), Expect = 0.0
Identities = 423/423 (100%)
Strand = Plus / Minus
Query: 1 agctttgacactgagctcatcgtacgcattcacgagattctcaagcctcgcgacgaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 agctttgacactgagctcatcgtacgcattcacgagattctcaagcctcgcgacgaattc 1660
Query: 61 gatcagtagcgaagcgaacgtagctagagaaagattactcgcgctctcgtacatttttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 gatcagtagcgaagcgaacgtagctagagaaagattactcgcgctctcgtacatttttcc 1600
Query: 121 cggctctcccagtggtggctgtaacatacttcccggcgtaatagagatccggctaggcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 cggctctcccagtggtggctgtaacatacttcccggcgtaatagagatccggctaggcca 1540
Query: 181 cgacggctgtttatgtatcatcgtccttgattgcaggtaaggaagcatcgtcgccgaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 cgacggctgtttatgtatcatcgtccttgattgcaggtaaggaagcatcgtcgccgaact 1480
Query: 241 caagttagctgcagttgtaacatcatcccaattcttcggtggacgaagagtggcttcact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 caagttagctgcagttgtaacatcatcccaattcttcggtggacgaagagtggcttcact 1420
Query: 301 ctgagatttatgagccaagatccgacttagatcagagtcgagattcgagattttttgttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 ctgagatttatgagccaagatccgacttagatcagagtcgagattcgagattttttgttc 1360
Query: 361 atcagtcaaatccctaaccctaggccggttcccgatttcccaattcttggcgttcacgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 atcagtcaaatccctaaccctaggccggttcccgatttcccaattcttggcgttcacgag 1300
Query: 421 aag 423
|||
Sbjct: 1299 aag 1297
Score = 545 bits (275), Expect = e-154
Identities = 275/275 (100%)
Strand = Plus / Minus
Query: 899 aaccttccagagaagtcgctacgttcacaaagttcttggcgaccaagttatggagatctt 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 aaccttccagagaagtcgctacgttcacaaagttcttggcgaccaagttatggagatctt 764
Query: 959 ccccagcccatatgggataaatgcaagtattcactatgaggccaacactggcaccaagag 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ccccagcccatatgggataaatgcaagtattcactatgaggccaacactggcaccaagag 704
Query: 1019 ctatcagaaggaaccttgaaacagctgtttccatgaattcccctgttttgtatcctgaca 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctatcagaaggaaccttgaaacagctgtttccatgaattcccctgttttgtatcctgaca 644
Query: 1079 ctattacgtagcaataggtcagcaagaacacccggaatccgtactcgtaaggcttcatcg 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctattacgtagcaataggtcagcaagaacacccggaatccgtactcgtaaggcttcatcg 584
Query: 1139 ttggatatagctttgcataagtcgcaaaaaaggct 1173
|||||||||||||||||||||||||||||||||||
Sbjct: 583 ttggatatagctttgcataagtcgcaaaaaaggct 549
Score = 381 bits (192), Expect = e-104
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 1434 cagagatagtggccgctgagctctaatcctgggatcttaaagaagatgaggatagaggta 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cagagatagtggccgctgagctctaatcctgggatcttaaagaagatgaggatagaggta 312
Query: 1494 agtgtcagagccaaacccatcttcgccgagaatatcatcttcctcgggtcagctgttccc 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agtgtcagagccaaacccatcttcgccgagaatatcatcttcctcgggtcagctgttccc 252
Query: 1554 atctcccatgccgtaaccaaaacatcctttaatttcttcacaacccccgtgatcttgtca 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atctcccatgccgtaaccaaaacatcctttaatttcttcacaacccccgtgatcttgtca 192
Query: 1614 gagaagtagctg 1625
||||||||||||
Sbjct: 191 gagaagtagctg 180
Score = 361 bits (182), Expect = 2e-98
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 1777 ctgtaggagcagcaacggacggaagttttgtcatcgtcgttgacattggaatagcctctg 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctgtaggagcagcaacggacggaagttttgtcatcgtcgttgacattggaatagcctctg 123
Query: 1837 ctctgtaggataagcctatctctcatgctttgtcgaaacgaaccatcgaacatactacct 1896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctctgtaggataagcctatctctcatgctttgtcgaaacgaaccatcgaacatactacct 63
Query: 1897 cgcctgaaagatccgtcgaacatgctaccccgcctgaaagattccagctttggtgccgcc 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgcctgaaagatccgtcgaacatgctaccccgcctgaaagattccagctttggtgccgcc 3
Query: 1957 at 1958
||
Sbjct: 2 at 1
Score = 285 bits (144), Expect = 8e-76
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1266 ctactacaaagatgctagcagcattaaaaacatctgcccaatttccagtcatctccgata 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctactacaaagatgctagcagcattaaaaacatctgcccaatttccagtcatctccgata 491
Query: 1326 tccaagacatgccaagcgccagtcctcctgcggacaatgttcctagtccccggttacatc 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tccaagacatgccaagcgccagtcctcctgcggacaatgttcctagtccccggttacatc 431
Query: 1386 ctttgctaaaggtggctcctatac 1409
||||||||||||||||||||||||
Sbjct: 430 ctttgctaaaggtggctcctatac 407
Score = 268 bits (135), Expect = 2e-70
Identities = 149/151 (98%), Gaps = 2/151 (1%)
Strand = Plus / Minus
Query: 512 cctggatctctgagagaatgcagccatgtaacgcccatgaccatgatagcacaatgcctc 571
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1108 cctggatctctgagagaatgcagccatgtaacgcc-atgaccatgatagcacaatgcctc 1050
Query: 572 aatgcaccaccctactttcacatacagtgcccatgggtatctaaaggatttgtacggtcc 631
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 aatgcaccacc-tactttcacatacagtgcccatgggtatctaaaggatttgtacggtcc 991
Query: 632 gtgtggtggctcccatgatgcaaaactcatc 662
|||||||||||||||||||||||||||||||
Sbjct: 990 gtgtggtggctcccatgatgcaaaactcatc 960
Score = 236 bits (119), Expect = 7e-61
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 694 attgaacggctgatctgtaaccactgtacactggatcttccgcgacagcttcatagacca 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 attgaacggctgatctgtaaccactgtacactggatcttccgcgacagcttcatagacca 878
Query: 754 gaatcctagatgggattgtatcatatgctacgcactcaagatatccgttcacacaacct 812
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaatcctagatgggattgtatcatatgctacgcactcaagatatccgttcacacaacct 819
>At3g18440.1 68416.m02344 expressed protein contains Pfam profile PF01027:
Uncharacterized protein family UPF0005
Length = 2005
Score = 50.1 bits (25), Expect = 8e-05
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 602 ccatgggtatctaaaggatttgtacggtccgtgtggtggctcccatgatgcaaaactcat 661
||||||||| |||| || ||||| ||||| ||||||||||||||| ||| ||||||||
Sbjct: 1071 ccatgggtagttaaatgacttgtatggtccatgtggtggctcccatattgcgaaactcat 1012
Query: 662 c 662
|
Sbjct: 1011 c 1011
Score = 46.1 bits (23), Expect = 0.001
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 899 aaccttccagagaagtcgctacgttcacaaagttcttggcgaccaagttatggagatctt 958
||||||| || |||||||| || |||| ||| ||||| |||| | |||||| ||||| |
Sbjct: 877 aaccttcaagggaagtcgcaacattcataaaattcttcacgacaaggttatgaagatcct 818
Query: 959 ccccagcccatatgggata 977
| ||||||||||| |||||
Sbjct: 817 ctccagcccatataggata 799
Score = 42.1 bits (21), Expect = 0.020
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 512 cctggatctctgagagaatgcagcc 536
||||||| |||||||||||||||||
Sbjct: 1159 cctggatttctgagagaatgcagcc 1135
Score = 34.2 bits (17), Expect = 4.8
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 792 agatatccgttcacacaacct 812
|||||||| ||||||||||||
Sbjct: 893 agatatccattcacacaacct 873
>At2g17470.1 68415.m02017 expressed protein contains Pfam profile PF01027:
Uncharacterized protein family UPF0005
Length = 1684
Score = 44.1 bits (22), Expect = 0.005
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 512 cctggatctctgagagaatgcagccatgtaacgcccatgaccatgatagcacaatgcctc 571
|||| |||||||| || ||||| ||||||| |||| ||||| ||| ||||||||||||
Sbjct: 949 cctgtatctctgaaagtatgcaaccatgtatcgcc-atgacggtgaaagcacaatgcctt 891
Query: 572 aatgcaccac 581
| ||||||||
Sbjct: 890 actgcaccac 881
Score = 36.2 bits (18), Expect = 1.2
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 946 ttatggagatcttccccagcccatat 971
||||||||||| ||||| ||||||||
Sbjct: 620 ttatggagatcctccccggcccatat 595
Score = 34.2 bits (17), Expect = 4.8
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 1096 gtcagcaagaacacccggaatccgtactcgtaaggcttcat 1136
|||| ||||||||||| |||| |||| || || ||||||||
Sbjct: 470 gtcaacaagaacaccctgaatgcgtattcatatggcttcat 430
>At5g23890.1 68418.m02806 expressed protein weak similarity to SP|P12957 Caldesmon
(CDM) {Gallus gallus}
Length = 3135
Score = 42.1 bits (21), Expect = 0.020
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2081 gatggtgtcatgactgatgaa 2101
|||||||||||||||||||||
Sbjct: 669 gatggtgtcatgactgatgaa 689
>At4g27420.1 68417.m03941 ABC transporter family protein D.melanogaster P element
CaSpeR-1 gene (white protein),PID:g870996
Length = 2155
Score = 38.2 bits (19), Expect = 0.31
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1410 aaaaaacaagagaagatca 1428
|||||||||||||||||||
Sbjct: 478 aaaaaacaagagaagatca 496
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,905
Number of Sequences: 29161
Number of extensions: 64905
Number of successful extensions: 1416
Number of sequences better than 10.0: 29
length of query: 2192
length of database: 44,058,232
effective HSP length: 18
effective length of query: 2174
effective length of database: 43,533,334
effective search space: 94641468116
effective search space used: 94641468116
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)