BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.4.cl.411.Contig1
(2457 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23230.1 68418.m02717 isochorismatase hydrolase family p... 1136 0.0
At5g23240.1 68418.m02719 DNAJ heat shock N-terminal domain-... 1011 0.0
At5g23220.1 68418.m02716 isochorismatase hydrolase family p... 662 0.0
At4g18590.1 68417.m02752 expressed protein 40 0.088
At1g47340.1 68414.m05241 F-box family protein contains F-bo... 40 0.088
>At5g23230.1 68418.m02717 isochorismatase hydrolase family protein low
similarity to SP|P45743 Isochorismatase (EC 3.3.2.1)
(2,3 dihydro-2,3 dihydroxybenzoate synthase)
(Superoxide-inducible protein 1) (SOI1) {Bacillus
subtilis}; contains Pfam profile PF00857:
isochorismatase family protein
Length = 730
Score = 1136 bits (573), Expect = 0.0
Identities = 583/585 (99%), Gaps = 1/585 (0%)
Strand = Plus / Minus
Query: 4 ggagtctatcgcaatcgacgagataagcaaagccatacgcngagattcattagagtagcc 63
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 584 ggagtctatcgcaatcgacgagataagcaaagccatacgc-gagattcattagagtagcc 526
Query: 64 tcgtgaagctcttcattaaccgtcgcagtcgcgtccgtcgagaaaaaaaccctaaacccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcgtgaagctcttcattaaccgtcgcagtcgcgtccgtcgagaaaaaaaccctaaacccc 466
Query: 124 tttacaaacgcttcacgcgccgtcgtctcacagcataggttcgtcatcactccgataacg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tttacaaacgcttcacgcgccgtcgtctcacagcataggttcgtcatcactccgataacg 406
Query: 184 atcacctccttcactccgatcttgtccagcttctcctggaggtgcgtgttgttaaacgca 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 405 atcacctccttcactccgatcttgtccagcttctcctgaaggtgcgtgttgttaaacgca 346
Query: 244 ctgtacgtgctcttctccacgatttcgtctggtccggtgacctggcgattgatttccggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctgtacgtgctcttctccacgatttcgtctggtccggtgacctggcgattgatttccggg 286
Query: 304 atgatttcggaatcagtggttccgtcgaggattagatcgccgttccaccactctccgagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atgatttcggaatcagtggttccgtcgaggattagatcgccgttccaccactctccgagc 226
Query: 364 atgccgtggtcggttggggatttgtggttgtggcgcgtgaagaatacggggattgaagcg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atgccgtggtcggttggggatttgtggttgtggcgcgtgaagaatacggggattgaagcg 166
Query: 424 cgtcggcagatgtcgatggtggtgagagcgttttggaggattggttcagccatagagtag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cgtcggcagatgtcgatggtggtgagagcgttttggaggattggttcagccatagagtag 106
Query: 484 aagtgattctgcatatcgatgacgagaagagctgcgattttaggatttggctctcgcttt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 aagtgattctgcatatcgatgacgagaagagctgcgattttaggatttggctctcgcttt 46
Query: 544 cgtgtctcgtacgttctcgatgatgaagaagccatttctggcggt 588
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 cgtgtctcgtacgttctcgatgatgaagaagccatttctggcggt 1
>At5g23240.1 68418.m02719 DNAJ heat shock N-terminal domain-containing protein low
similarity to SP|O34136 Chaperone protein dnaJ (40 kDa
heat shock chaperone protein) (HSP40) {Deinococcus
proteolyticus}; contains Pfam profile PF00226: DnaJ
domain
Length = 1711
Score = 1011 bits (510), Expect = 0.0
Identities = 519/522 (99%)
Strand = Plus / Minus
Query: 1934 ccttgtcataggcttggcgcgagatcggatcagagagaagctggtaagcctcgttaagaa 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ccttgtcataggcttggcgcgagatcggatcagagagaagctggtaagcctcgttaagaa 465
Query: 1994 tgatggccatatcatgaccgggatctcctgcgatatctggatgacatcgtttctgcaacg 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgatggccatatcatgaccgggatctcctgcgatatctggatgacatcgtttctgcaacg 405
Query: 2054 cacgataggctgatttgatctgagacttatcagaacttcgatcaatacccaagaggtcat 2113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cacgataggctgatttgatctgagacttatcagaacttcgatcaatacccaagaggtcat 345
Query: 2114 aaagatcaaagtcagtgatagacgatgatgatgaagttgctctacacttgaacttgagtg 2173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaagatcaaagtcagtgatagacgatgatgatgaagttgctctacacttgaacttgagtg 285
Query: 2174 gtgatctaacggtgatgagcttctgagatgttgaacatgcccatgtaccagttgatggag 2233
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 284 gtgatctaacggtgatgagcttctgagatgttgaacatggccatgtagcagttgatggag 225
Query: 2234 gaagagtcgtcggagaaaaaatagccggtgtcatattttccccttctctgttttggaagg 2293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gaagagtcgtcggagaaaaaatagccggtgtcatattttccccttctctgttttggaagg 165
Query: 2294 tggatgagtttagagagggacaagttgttgaaaatatctctatatgaagctatttttcca 2353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tggatgagtttagagagggacaagttgttgaaaatatctctatatgaagctatttttcca 105
Query: 2354 tctctcttggaaagatattttatttgggacgaataaaagttccaaattgggttatagcta 2413
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 104 tctctcttggaaagatattttatttgggacgaataaaagttccaaattgagttatagcta 45
Query: 2414 aaatgaataatattttataaaaaataaaatttttgaaagcag 2455
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 aaatgaataatattttataaaaaataaaatttttgaaagcag 3
Score = 712 bits (359), Expect = 0.0
Identities = 359/359 (100%)
Strand = Plus / Minus
Query: 1016 gttggtttctcttctgaaggaaatgtcttacgagtcacttgcggattcgagctagctttg 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 gttggtttctcttctgaaggaaatgtcttacgagtcacttgcggattcgagctagctttg 1261
Query: 1076 gaaccgttgttgtttccagatgagggaagagcagcgtttgatggactccagtaatcttct 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 gaaccgttgttgtttccagatgagggaagagcagcgtttgatggactccagtaatcttct 1201
Query: 1136 ccaagcaagtaagctgatcctttctctttggttcttccgctttggtctgcttgtttcatt 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 ccaagcaagtaagctgatcctttctctttggttcttccgctttggtctgcttgtttcatt 1141
Query: 1196 gctgccacaacatcttgaagctttctgatatctggatcaacagctttctttcttttggta 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 gctgccacaacatcttgaagctttctgatatctggatcaacagctttctttcttttggta 1081
Query: 1256 aaagttagactcatgtttgattctggactcaatggtttcgtgtacggtgatgatctccag 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 aaagttagactcatgtttgattctggactcaatggtttcgtgtacggtgatgatctccag 1021
Query: 1316 tatagccaattggaaatggacctaatcgcctctactgcacttatttgtacttctctctg 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 tatagccaattggaaatggacctaatcgcctctactgcacttatttgtacttctctctg 962
Score = 607 bits (306), Expect = e-172
Identities = 306/306 (100%)
Strand = Plus / Minus
Query: 711 atacaggtataattcaatgtgtatatttgttgtatagtataatgttctttgttacatttg 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 atacaggtataattcaatgtgtatatttgttgtatagtataatgttctttgttacatttg 1652
Query: 771 caggtgaacacgagtacctgctctaaagagggatatgatgtacatatatatgatctatga 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 caggtgaacacgagtacctgctctaaagagggatatgatgtacatatatatgatctatga 1592
Query: 831 atcttatgtttctttatcttctagcttgtgttgaacagcttccacaagttggagtaacat 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 atcttatgtttctttatcttctagcttgtgttgaacagcttccacaagttggagtaacat 1532
Query: 891 tgctccaatgaagtaccatgtaactcctgctaacaatatctgctgccatggactgttaac 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 tgctccaatgaagtaccatgtaactcctgctaacaatatctgctgccatggactgttaac 1472
Query: 951 tatggataaagccagcgagccgccgatatggtcgttgagctcagaggcggctctgtaact 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 tatggataaagccagcgagccgccgatatggtcgttgagctcagaggcggctctgtaact 1412
Query: 1011 tgcttg 1016
||||||
Sbjct: 1411 tgcttg 1406
Score = 486 bits (245), Expect = e-136
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1606 agggcaagcttcgatggcttctttgattttggattcaggatcagcccattgagcaacaac 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agggcaagcttcgatggcttctttgattttggattcaggatcagcccattgagcaacaac 707
Query: 1666 cctcgctctcccgtaagcagtttcaatagcaaatgttttctctgcacacaaagcacactt 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cctcgctctcccgtaagcagtttcaatagcaaatgttttctctgcacacaaagcacactt 647
Query: 1726 caaacacccaacacacttaacctcgtccacaaacgcagctcgttgctctgtttctggtcc 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 caaacacccaacacacttaacctcgtccacaaacgcagctcgttgctctgtttctggtcc 587
Query: 1786 acaccaaaccgagtatatcggtttccctgtatagcctctgagttcttctagttttgcttg 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 acaccaaaccgagtatatcggtttccctgtatagcctctgagttcttctagttttgcttg 527
Query: 1846 ctcct 1850
|||||
Sbjct: 526 ctcct 522
Score = 329 bits (166), Expect = 7e-89
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 1443 ctgggaggtctcttttgtggttctgctcatagctttagcgtatctttcttggaacttctt 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 ctgggaggtctcttttgtggttctgctcatagctttagcgtatctttcttggaacttctt 905
Query: 1503 gacatcaacaaatacattggagacacgctcaccaaccgtgtttccaaccccgatcctcac 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gacatcaacaaatacattggagacacgctcaccaaccgtgtttccaaccccgatcctcac 845
Query: 1563 gttgcctcgtggttgctttgacataaggaactccaatggagcaagg 1608
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gttgcctcgtggttgctttgacataaggaactccaatggagcaagg 799
>At5g23220.1 68418.m02716 isochorismatase hydrolase family protein low
similarity to SP|P45743Isochorismatase (EC 3.3.2.1) (2,3
dihydro-2,3 dihydroxybenzoate synthase)
(Superoxide-inducible protein) (SOI1) {Bacillus
subtilis}; contains Pfam profile PF00857:
isochorismatase family protein
Length = 861
Score = 662 bits (334), Expect = 0.0
Identities = 524/586 (89%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 4 ggagtctatcgcaatcgacgagataagcaaagccatacgcngagattcattagagtagcc 63
||||| |||||||||||||||||||||| |||||| | || |||||||||||| ||||||
Sbjct: 586 ggagtttatcgcaatcgacgagataagcgaagccaaaagc-gagattcattagcgtagcc 528
Query: 64 tcgtgaagctcttcattaaccgtcgcagtcgcgtccgtcgagaaaaaaaccctaaacccc 123
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 527 tcgtgaagctcctcattaaacgtcgcagtcgcgtccgtcgagaaaaaaaccctaaaaccc 468
Query: 124 tttacaaacgcttcacgcgccgtcgtctcacagcataggttcgtcatcactccgataacg 183
|| | |||||||||||||||||| ||||||||||| | |||||||||||||||||| |||
Sbjct: 467 ttaataaacgcttcacgcgccgttgtctcacagcacaagttcgtcatcactccgatcacg 408
Query: 184 atcacctccttcactccgatcttgtccagcttctcctggaggtgcgtgttgttaaacgca 243
||||||||||| ||||||||||| ||||| || ||||||||| | || ||||||||||||
Sbjct: 407 atcacctcctttactccgatcttttccaggttttcctggaggcgggttttgttaaacgca 348
Query: 244 ctgtacgtgctcttctccacgatttcgtctggtccggtgacctggcgattgatttccggg 303
||||||||| |||||||||| || |||||||||||||| || |||| | || ||| ||
Sbjct: 347 ctgtacgtgttcttctccaccatctcgtctggtccggttacttggccttgtatctcctgg 288
Query: 304 atgatttcggaatcagtggttccgtcgaggattagatcgccgttccaccactctccgagc 363
|||||||| ||||| ||||||||||| ||||||| ||||||||| |||||||| ||||||
Sbjct: 287 atgatttcagaatcggtggttccgtcaaggattacatcgccgttacaccactcgccgagc 228
Query: 364 atgccgtggtcggttggggatttgtggttgtggcgcgtgaagaatacggggattgaagcg 423
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||| |||
Sbjct: 227 atgccgtggtcggtcggggatttgtggttgtgacgcgtaaagaatacggggactgaggcg 168
Query: 424 cgtcggcagatgtcgatggtggtgagagcgttttggaggattggttcagccatagagtag 483
||||||||||||||||||||||||||| |||| | |||||| |||| ||||| ||| ||
Sbjct: 167 cgtcggcagatgtcgatggtggtgagaacgttgttgaggatgggtttggccatggaggag 108
Query: 484 aagtgattctgcatatcgatgacgagaagagctgcgattttaggatttggctctcgcttt 543
|||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct: 107 aagtgattctgcatgtcgataacgagaagagctgcgattttagagtttggatctcgcttt 48
Query: 544 cgtgtctcgtacgttctcgatgatgaagaagccatttctggcggtg 589
|||||||||||| |||||| |||||| |||||||||| ||| ||||
Sbjct: 47 cgtgtctcgtactttctcgttgatgaggaagccatttttggtggtg 2
>At4g18590.1 68417.m02752 expressed protein
Length = 633
Score = 40.1 bits (20), Expect = 0.088
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 825 ctatgaatcttatgtttctt 844
||||||||||||||||||||
Sbjct: 603 ctatgaatcttatgtttctt 622
>At1g47340.1 68414.m05241 F-box family protein contains F-box domain Pfam:PF00646
Length = 2067
Score = 40.1 bits (20), Expect = 0.088
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1240 tttctttcttttggtaaaag 1259
||||||||||||||||||||
Sbjct: 1660 tttctttcttttggtaaaag 1679
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,690
Number of Sequences: 29161
Number of extensions: 85690
Number of successful extensions: 2040
Number of sequences better than 10.0: 75
length of query: 2457
length of database: 44,058,232
effective HSP length: 19
effective length of query: 2438
effective length of database: 43,504,173
effective search space: 106063173774
effective search space used: 106063173774
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)