BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.39.cl.3924.Contig1
         (120 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_177811.2|  expressed protein [Arabidopsis thaliana]|g...    79   2e-14
pir||C96797  unknown protein [imported] - Arabidopsis thalia...    79   2e-14
gb|AAF04445.1|  unknown protein, 3' partial; 84785-87684 [Ar...    79   2e-14
pir||H86344  T22I11.1 protein - Arabidopsis thaliana|gi|8886...    64   9e-10
ref|NP_173541.1|  expressed protein [Arabidopsis thaliana]         64   9e-10
emb|CAE04638.3|  OSJNBa0028I23.20 [Oryza sativa (japonica cu...    35   0.35 

>ref|NP_177811.2| expressed protein [Arabidopsis
           thaliana]|gi|24638217|sp|Q8S3U9|SEC5_ARATH Exocyst
           complex component Sec5|gi|19387170|gb|AAL87121.1| SEC5a
           [Arabidopsis thaliana]|gi|26452107|dbj|BAC43143.1|
           unknown protein [Arabidopsis
           thaliana]|gi|29029068|gb|AAO64913.1| At1g76850
           [Arabidopsis thaliana]
          Length = 1090

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 34/35 (97%), Positives = 35/35 (99%)
 Frame = -3

Query: 118 RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAEV 14
           RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAE+
Sbjct: 109 RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAEL 143



>pir||C96797 unknown protein [imported] - Arabidopsis
           thaliana|gi|12322227|gb|AAG51148.1| unknown protein
           [Arabidopsis thaliana]
          Length = 1085

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 34/35 (97%), Positives = 35/35 (99%)
 Frame = -3

Query: 118 RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAEV 14
           RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAE+
Sbjct: 109 RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAEL 143



>gb|AAF04445.1| unknown protein, 3' partial; 84785-87684 [Arabidopsis thaliana]
          Length = 475

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 34/35 (97%), Positives = 35/35 (99%)
 Frame = -3

Query: 118 RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAEV 14
           RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAE+
Sbjct: 109 RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAEL 143



>pir||H86344 T22I11.1 protein - Arabidopsis thaliana|gi|8886985|gb|AAF80645.1|
           Contains similarity to a hypothetical protein F28O16.19
           gi|6143899 from Arabidopsis thaliana gb|AC010718
          Length = 657

 Score = 63.9 bits (154), Expect = 9e-10
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = -3

Query: 118 RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAEV 14
           RG   +E+GRARKEDD AWDG EPDCWKRVNEAE+
Sbjct: 107 RGGSGKERGRARKEDDRAWDGVEPDCWKRVNEAEL 141



>ref|NP_173541.1| expressed protein [Arabidopsis thaliana]
          Length = 1090

 Score = 63.9 bits (154), Expect = 9e-10
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = -3

Query: 118 RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAEV 14
           RG   +E+GRARKEDD AWDG EPDCWKRVNEAE+
Sbjct: 107 RGGSGKERGRARKEDDRAWDGVEPDCWKRVNEAEL 141



>emb|CAE04638.3| OSJNBa0028I23.20 [Oryza sativa (japonica cultivar-group)]
          Length = 1117

 Score = 35.4 bits (80), Expect = 0.35
 Identities = 17/35 (48%), Positives = 20/35 (56%)
 Frame = -3

Query: 118 RGSDVREKGRARKEDDGAWDGGEPDCWKRVNEAEV 14
           RG       RA   DDG +D  EP  WKRV+EAE+
Sbjct: 106 RGGGRAGARRAASRDDGDFDDDEPRSWKRVDEAEL 140



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 15
effective length of database: 601,283,448
effective search space used: 14430802752
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)