BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.37.cl.3716.Contig1
(1244 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45890.1 68418.m05644 senescence-specific SAG12 protein ... 2436 0.0
At1g20850.1 68414.m02612 cysteine endopeptidase, papain-typ... 52 1e-05
At5g50260.1 68418.m06224 cysteine proteinase, putative simi... 44 0.003
At3g19400.1 68416.m02461 cysteine proteinase, putative non-... 44 0.003
At3g19400.2 68416.m02460 cysteine proteinase, putative non-... 44 0.003
>At5g45890.1 68418.m05644 senescence-specific SAG12 protein (SAG12) / cysteine
proteinase, putative identical to senescence-specific
protein SAG12 GI:1046373 from [Arabidopsis thaliana]
Length = 1253
Score = 2436 bits (1229), Expect = 0.0
Identities = 1232/1233 (99%)
Strand = Plus / Minus
Query: 1 gaaagaaacatttcgaaaattatcaatcctttgcattacataagcttacaatttcataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 gaaagaaacatttcgaaaattatcaatcctttgcattacataagcttacaatttcataaa 1193
Query: 61 atgcatacaacagtctaaatacaatttttttacataaaacaattcaaattatttttagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 atgcatacaacagtctaaatacaatttttttacataaaacaattcaaattatttttagac 1133
Query: 121 atcaatcccacacaaacatacacaattaaaagcttaacacggttttgaattcatatagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 atcaatcccacacaaacatacacaattaaaagcttaacacggttttgaattcatatagtt 1073
Query: 181 gggtaagaagctttcatggcaagaccacatagtccttgtttatccttgacatctttttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 gggtaagaagctttcatggcaagaccacatagtccttgtttatccttgacatctttttga 1013
Query: 241 atcctcatatatccactttctccccattttgttccccatgaattcttgatgatccaatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 atcctcatatatccactttctccccattttgttccccatgaattcttgatgatccaatac 953
Query: 301 tttgatccgttagtagattcgccgtatccaatcgcagttactgcatgatcaagatacgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 tttgatccgttagtagattcgccgtatccaatcgcagttactgcatgatcaagatacgta 893
Query: 361 gtgcactctccagtgaacacaccagacgaatagaattggaaatcaaaaccacctccttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gtgcactctccagtgaacacaccagacgaatagaattggaaatcaaaaccacctccttca 833
Query: 421 attccaacgctaaccggttggtgtgccactgccttcatcagtgcttgctcatcattaacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 attccaacgctaaccggttggtgtgccactgccttcatcagtgcttgctcatcattaacc 773
Query: 481 gggacatcctcataacctgtaatagaagttgcttttggattggtctttttggaattgcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gggacatcctcataacctgtaatagaagttgcttttggattggtctttttggaattgcaa 713
Query: 541 gtagcgtcttcgcctttgtaaggataatttgactcagttgtcaagccgccagtcgctttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gtagcgtcttcgcctttgtaaggataatttgactcagttgtcaagccgccagtcgctttt 653
Query: 601 atatgctcaaacgcagtatccattaaaccgccttcgcagccaaaatcgtttgtgtcgcaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 atatgctcaaacgcagtatccattaaaccgccttcgcagccaaaatcgtttgtgtcgcaa 593
Query: 661 tcaacaagctgttgttctgacaaagatataagtttccctttctttatttgtgttgctcct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcaacaagctgttgttctgacaaagatataagtttccctttctttatttgtgttgctcct 533
Query: 721 tcaatagccgcaaccgctgaaaacgcccaacaacatccgcagctgccttgattcttgata 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tcaatagccgcaaccgctgaaaacgcccaacaacatccgcagctgccttgattcttgata 473
Query: 781 ggggtcacagctcctttcttcctccagtcaacagaaaccggcaaagcaccagaagaaacg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggggtcacagctcctttcttcctccagtcaacagaaaccggcaaagcaccagaagaaacg 413
Query: 841 ttttggtacctaaacggcgacattttagtttggctttggctagataatgccgagacacct 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttttggtacctaaacggcgacattttagtttggctttggctagataatgccgagacacct 353
Query: 901 ttgaaaccagtgtacatggaacgaaattcgtcattggttaaatcagcaaactgatttacc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgaaaccagtgtacatggaacgaaattcgtcattggttaaatcagcaaactgatttacc 293
Query: 961 gcaagtttgaaagttcttccggcaggaatgctatttaaatgttcaatgcgttcgacgttg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gcaagtttgaaagttcttccggcaggaatgctatttaaatgttcaatgcgttcgacgttg 233
Query: 1021 tttttgaacacaacgtagcgattgttttcctccttcacatccgcgtagacacgaccgtgt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 232 tttttgaacacaacgtagcgattgttttcctccttcacatccgcgtagacacggccgtgt 173
Query: 1081 ttagtcatccactcgatgtgcctcttttgcatgatgagttcattgtcgagtggacgagaa 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ttagtcatccactcgatgtgcctcttttgcatgatgagttcattgtcgagtggacgagaa 113
Query: 1141 agagtgatggagaaacagaatgatgaaaatatagcgacgaagagaaagatttgcatatgt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 agagtgatggagaaacagaatgatgaaaatatagcgacgaagagaaagatttgcatatgt 53
Query: 1201 tttaaagccattgttttaggaaagttaaatgac 1233
|||||||||||||||||||||||||||||||||
Sbjct: 52 tttaaagccattgttttaggaaagttaaatgac 20
>At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XCP2) identical
to papain-type cysteine endopeptidase XCP2 GI:6708183
from [Arabidopsis thaliana]
Length = 1285
Score = 52.0 bits (26), Expect = 1e-05
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 786 cacagctcctttcttcctccagtcaacaga 815
||||||||||||||| ||||||||||||||
Sbjct: 474 cacagctcctttctttctccagtcaacaga 445
Score = 46.1 bits (23), Expect = 7e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 257 tttctccccattttgttccccatgaattctt 287
||||||||||||||| |||||| ||||||||
Sbjct: 1003 tttctccccattttggtccccaagaattctt 973
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to cysteine
endopeptidase precursor CysEP GI:2944446 from [Ricinus
communis]
Length = 1541
Score = 44.1 bits (22), Expect = 0.003
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 273 tccccatgaattcttgatgatccaatactttgatccgt 310
||||||||||||||| | ||||||||||||| |||||
Sbjct: 1218 tccccatgaattcttaacaatccaatactttgttccgt 1181
Score = 38.2 bits (19), Expect = 0.17
Identities = 61/75 (81%)
Strand = Plus / Minus
Query: 738 tgaaaacgcccaacaacatccgcagctgccttgattcttgataggggtcacagctccttt 797
||||||||||||||||| ||||| |||||| || |||| ||| || || ||||| ||
Sbjct: 750 tgaaaacgcccaacaactcccgcattggccttggtttttgacaggagtgacggctccatt 691
Query: 798 cttcctccagtcaac 812
||| ||||| |||||
Sbjct: 690 ctttctccaatcaac 676
>At3g19400.1 68416.m02461 cysteine proteinase, putative non-consensus AT
acceptor site at exon 3; contains similarity to cysteine
protease CYP1 GI:2828252, TDI-65 GI:5726641 from
[Lycopersicon esculentum]
Length = 1253
Score = 44.1 bits (22), Expect = 0.003
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 731 caaccgctgaaaacgcccaacaacatccgcagctgccttgat 772
||||||| |||||||||||||||| ||| ||| | |||||||
Sbjct: 523 caaccgcagaaaacgcccaacaacttccacagtttccttgat 482
>At3g19400.2 68416.m02460 cysteine proteinase, putative non-consensus AT
acceptor site at exon 3; contains similarity to cysteine
protease CYP1 GI:2828252, TDI-65 GI:5726641 from
[Lycopersicon esculentum]
Length = 936
Score = 44.1 bits (22), Expect = 0.003
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 731 caaccgctgaaaacgcccaacaacatccgcagctgccttgat 772
||||||| |||||||||||||||| ||| ||| | |||||||
Sbjct: 523 caaccgcagaaaacgcccaacaacttccacagtttccttgat 482
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,728
Number of Sequences: 29161
Number of extensions: 38728
Number of successful extensions: 879
Number of sequences better than 10.0: 32
length of query: 1244
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1226
effective length of database: 43,533,334
effective search space: 53371867484
effective search space used: 53371867484
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)