BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.3.cl.383.Contig1
(1743 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23093.1 68415.m02754 expressed protein 3439 0.0
At2g23096.1 68415.m02755 oxidoreductase, 2OG-Fe(II) oxygena... 876 0.0
At5g55280.1 68418.m06889 cell division protein FtsZ, chloro... 46 0.001
At4g25250.1 68417.m03633 invertase/pectin methylesterase in... 46 0.001
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein f... 42 0.016
>At2g23093.1 68415.m02754 expressed protein
Length = 1743
Score = 3439 bits (1735), Expect = 0.0
Identities = 1741/1743 (99%)
Strand = Plus / Plus
Query: 1 acgtaattgagtttttttgtttgttcttttacttctttctccggctgatttaccggtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acgtaattgagtttttttgtttgttcttttacttctttctccggctgatttaccggtgaa 60
Query: 61 ttttggatcgatgggtgtcgttattgagacctttatttgggaaccaagctcaagcttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttggatcgatgggtgtcgttattgagacctttatttgggaaccaagctcaagcttctt 120
Query: 121 catcttcttcttcgtttccacatttttatcgatatctctgtttccttacttggccaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catcttcttcttcgtttccacatttttatcgatatctctgtttccttacttggccaaaaa 180
Query: 181 cagaacttttggtagctttgatcattctatttcctcttctttcgctcggttccagagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cagaacttttggtagctttgatcattctatttcctcttctttcgctcggttccagagatg 240
Query: 241 gtttctagctatctacactctctcttcagtgatggaaggtttattgtcagtgtatggaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtttctagctatctacactctctcttcagtgatggaaggtttattgtcagtgtatggaga 300
Query: 301 attggagttaacaacttatggcttaagtaaagaatcaatggtgttttatctctgtgttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attggagttaacaacttatggcttaagtaaagaatcaatggtgttttatctctgtgttgg 360
Query: 361 ttattcgaccgctcttgttcttggtcctgtacttggtgtggtttctgatctcataggtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttattcgaccgctcttgttcttggtcctgtacttggtgtggtttctgatctcataggtca 420
Query: 421 gaagaaaatttgtctactctattgtgtcttgcaccttattgttggtgtgtggaagaggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaagaaaatttgtctactctattgtgtcttgcaccttattgttggtgtgtggaagaggat 480
Query: 481 tacaatgagtcctagtgcttggtttgcaaatgtttttctctcccttgctggtcttgtata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tacaatgagtcctagtgcttggtttgcaaatgtttttctctcccttgctggtcttgtata 540
Query: 541 ttcatttgggtttgagacttggcttgttgtggaacatgaaaagcaaagtcagaggaatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcatttgggtttgagacttggcttgttgtggaacatgaaaagcaaagtcagaggaatga 600
Query: 601 ctcgttaaatgagacattctggttgatgacttttcttgagtctgcatctttaattggagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctcgttaaatgagacattctggttgatgacttttcttgagtctgcatctttaattggagg 660
Query: 661 tcaagttcttgcaaattggcttgtgggtgaaaatgttcaggatgggattgcattatctgc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcaagttcttgcaaattggcttgtgggtgaaaatgttcaggatgggattgcattatctgc 720
Query: 721 tacggcgtctctgctcttgtctgttgtgactattatttgtattgtccagactgcaaaaga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tacggcgtctctgctcttgtctgttgtgactattatttgtattgtccagactgcaaaaga 780
Query: 781 gccgttgaagacccttccgtttagggattattccacagctttctatgcgtatgttcttgg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gccgttgaagacccttccgtttagggattattccacagctttctatgcgtatgttcttgg 840
Query: 841 tgacaaaagaatatggtttctgggaacttcacaagcctgtcttcagttttccactgcagt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgacaaaagaatatggtttctgggaacttcacaagcctgtcttcagttttccactgcagt 900
Query: 901 cttttggattctgtgggcaccaacaatagtggctgatgggcgtgaagtgaatctgggatt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cttttggattctgtgggcaccaacaatagtggctgatgggcgtgaagtgaatctgggatt 960
Query: 961 gatatatccatgtttcttgggttcaagaatgcttgggagtactgtattcccatggctaat 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gatatatccatgtttcttgggttcaagaatgcttgggagtactgtattcccatggctaat 1020
Query: 1021 gagtggacaatcattgctccggcttgaagattgcttagtctacatatacgcactacttgg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gagtggacaatcattgctccggcttgaagattgcttagtctacatatacgcactacttgg 1080
Query: 1081 gatagtgttttctatagtagcctatgattatcaggaaatccgaatcttagtagtactttt 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gatagtgttttctatagtagcctatgattatcaggaaatccgaatcttagtagtactttt 1140
Query: 1141 ctgcttatttcatggctttgctggactggcacttcctttgcttgcaagattaagaacaat 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ctgcttatttcatggctttgctggactggcacttcctttgcttgcaagattaagaacaat 1200
Query: 1201 gtatgtaccaaatgaattgcgtggagggatgataagcctctctcaagttccagccaatgc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gtatgtaccaaatgaattgcgtggagggatgataagcctctctcaagttccagccaatgc 1260
Query: 1261 agctattttgtttttcttaatccagagaggctactctaacaagatcgagaactcaacaat 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 agctattttgtttttcttaatccagagaggctactctaacaagatcgagaactcaacaat 1320
Query: 1321 gatggctcttggtgccatttctttattcactgcatctggttgtatatatatgttgagacg 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 gatggctcttggtgccatttctttattcactgcatctggttgtatatatatgttgagacg 1380
Query: 1381 atggggaaagtcaccacaccatgattggcacaaattatgatcctgagtaactcgtggtct 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 atggggaaagtcaccacaccatgattggcacaaattatgatcctgagtaactcgtggtct 1440
Query: 1441 ctggttatgatacttatgcggaagcaggacaaggcaaaacgaagataaatctactggaaa 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 ctggttatgatacttatgcggaagcaggacaaggcaaaacgaagataaatctactggaaa 1500
Query: 1501 ctcaagttggtctatgatcttgtgttaatggtctcgcttcgattttgtagcagcatgaag 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 ctcaagttggtctatgatcttgtgttaatggtctcgcttcgattttgtagcagcatgaag 1560
Query: 1561 tgaggaaacacaaaaccttggaagttcaaagatgcaatgaaaccagtataagaggtttga 1620
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1561 tgaggaaacacaaaaccttggaagttcaaagatgcaatgaaagcagtataagaggtttga 1620
Query: 1621 ttattagtttaagaggattctattattttaaatgattgtttgattcatgtcttattaaga 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 ttattagtttaagaggattctattattttaaatgattgtttgattcatgtcttattaaga 1680
Query: 1681 tcatctcctttcgaccttttaggcattattgttttactagtaaatatgaatgaaattttt 1740
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 tcatctcctttggaccttttaggcattattgttttactagtaaatatgaatgaaattttt 1740
Query: 1741 aca 1743
|||
Sbjct: 1741 aca 1743
>At2g23096.1 68415.m02755 oxidoreductase, 2OG-Fe(II) oxygenase family protein
contains Pfam profile: PF03171 oxidoreductase, 2OG-Fe(II)
oxygenase family
Length = 1301
Score = 876 bits (442), Expect = 0.0
Identities = 448/450 (99%)
Strand = Plus / Minus
Query: 1294 ctctaacaagatcgagaactcaacaatgatggctcttggtgccatttctttattcactgc 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1301 ctctaacaagatcgagaactcaacaatgatggctcttggtgccatttctttattcactgc 1242
Query: 1354 atctggttgtatatatatgttgagacgatggggaaagtcaccacaccatgattggcacaa 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1241 atctggttgtatatatatgttgagacgatggggaaagtcaccacaccatgattggcacaa 1182
Query: 1414 attatgatcctgagtaactcgtggtctctggttatgatacttatgcggaagcaggacaag 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 attatgatcctgagtaactcgtggtctctggttatgatacttatgcggaagcaggacaag 1122
Query: 1474 gcaaaacgaagataaatctactggaaactcaagttggtctatgatcttgtgttaatggtc 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 gcaaaacgaagataaatctactggaaactcaagttggtctatgatcttgtgttaatggtc 1062
Query: 1534 tcgcttcgattttgtagcagcatgaagtgaggaaacacaaaaccttggaagttcaaagat 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 tcgcttcgattttgtagcagcatgaagtgaggaaacacaaaaccttggaagttcaaagat 1002
Query: 1594 gcaatgaaaccagtataagaggtttgattattagtttaagaggattctattattttaaat 1653
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gcaatgaaagcagtataagaggtttgattattagtttaagaggattctattattttaaat 942
Query: 1654 gattgtttgattcatgtcttattaagatcatctcctttcgaccttttaggcattattgtt 1713
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 941 gattgtttgattcatgtcttattaagatcatctcctttggaccttttaggcattattgtt 882
Query: 1714 ttactagtaaatatgaatgaaatttttaca 1743
||||||||||||||||||||||||||||||
Sbjct: 881 ttactagtaaatatgaatgaaatttttaca 852
>At5g55280.1 68418.m06889 cell division protein FtsZ, chloroplast, putative
(FTSZ) identical to SP|Q42545 Cell division protein ftsZ
homolog, chloroplast precursor {Arabidopsis thaliana};
similar to FtsZ1 [Tagetes erecta] GI:8896066; contains
Pfam profiles PF00091: Tubulin/FtsZ family, GTPase
domain, PF03953: Tubulin/FtsZ family, C-terminal domain
Length = 1471
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 116 ttcttcatcttcttcttcgtttc 138
|||||||||||||||||||||||
Sbjct: 127 ttcttcatcttcttcttcgtttc 149
>At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibitor family
protein similar to pectinesterase from Arabidopsis
thaliana SP|Q42534, Lycopersicon esculentum SP|Q43143;
contains Pfam profile PF04043: Plant invertase/pectin
methylesterase inhibitor
Length = 812
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 115 cttcttcatcttcttcttcgtttccacattt 145
|||||||| ||||||||| ||||||||||||
Sbjct: 601 cttcttcaccttcttctttgtttccacattt 571
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family protein
contains proline-rich domains, INTERPRO:IPR000694
Length = 1060
Score = 42.1 bits (21), Expect = 0.016
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 115 cttcttcatcttcttcttcgt 135
|||||||||||||||||||||
Sbjct: 560 cttcttcatcttcttcttcgt 540
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,642
Number of Sequences: 29161
Number of extensions: 75642
Number of successful extensions: 3953
Number of sequences better than 10.0: 234
length of query: 1743
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1725
effective length of database: 43,533,334
effective search space: 75095001150
effective search space used: 75095001150
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)