BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU229489_RAFL17_09_E13.r
(361 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16770.1 68415.m01923 expressed protein 708 0.0
At5g62250.1 68418.m07816 microtubule associated protein (MA... 38 0.049
At2g32330.1 68415.m03952 expressed protein contains Pfam p... 38 0.049
At5g24740.1 68418.m02920 expressed protein 34 0.76
At4g02610.1 68417.m00355 tryptophan synthase, alpha subunit... 34 0.76
>At2g16770.1 68415.m01923 expressed protein
Length = 1424
Score = 708 bits (357), Expect = 0.0
Identities = 360/361 (99%)
Strand = Plus / Minus
Query: 1 aagtcgaaaacaaccaagttactaattgtcgagatggcttcccataacttacttttccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 aagtcgaaaacaaccaagttactaattgtcgagatggcttcccataacttacttttccaa 1365
Query: 61 atgcaacattcaatctcttctacaagaacttcacaacaaaaaaagaagctactaaagtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 atgcaacattcaatctcttctacaagaacttcacaacaaaaaaagaagctactaaagtac 1305
Query: 121 aaaaccaaatagcaaactcgatttgaatattaacaagtcttatttctagcttcaacgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 aaaaccaaatagcaaactcgatttgaatattaacaagtcttatttctagcttcaacgagc 1245
Query: 181 tcaacaaggaaatgcaaagagactaaaaacctgatgatagcacaaatggacttgaaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 tcaacaaggaaatgcaaagagactaaaaacctgatgatagcacaaatggacttgaaggaa 1185
Query: 241 gctggtgatgcagttgaactctactacttattggaagaaaattaactaccaacttgaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 gctggtgatgcagttgaactctactacttattggaagaaaattaactaccaacttgaaaa 1125
Query: 301 tggggtgaatgattgatagtatcacatgattgatgatacttcaaactggtttcgctgctc 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1124 tggggtgaatgattgatagtatcacatgattgatgatacttcaaactgctttcgctgctc 1065
Query: 361 g 361
|
Sbjct: 1064 g 1064
>At5g62250.1 68418.m07816 microtubule associated protein (MAP65/ASE1) family
protein low similarity to protein regulating
cytokinesis 1 (PRC1) [Homo sapiens] GI:2865521;
contains Pfam profile PF03999: Microtubule associated
protein (MAP65/ASE1 family)
Length = 1650
Score = 38.2 bits (19), Expect = 0.049
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 73 atctcttctacaagaactt 91
|||||||||||||||||||
Sbjct: 33 atctcttctacaagaactt 51
>At2g32330.1 68415.m03952 expressed protein contains Pfam profile: PF04446 family
of unknown function (DUF549)
Length = 1302
Score = 38.2 bits (19), Expect = 0.049
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 278 aaaattaactaccaacttgaaaa 300
||||||||||||||| |||||||
Sbjct: 1149 aaaattaactaccaaattgaaaa 1127
>At5g24740.1 68418.m02920 expressed protein
Length = 10043
Score = 34.2 bits (17), Expect = 0.76
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 55 ttccaaatgcaacattc 71
|||||||||||||||||
Sbjct: 8902 ttccaaatgcaacattc 8886
>At4g02610.1 68417.m00355 tryptophan synthase, alpha subunit, putative similar
to A. thaliana tryptophan synthase alpha chain (EC
4.2.1.20), GenBank accession number U18993 (gi:619753)
Length = 1216
Score = 34.2 bits (17), Expect = 0.76
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 69 ttcaatctcttctacaa 85
|||||||||||||||||
Sbjct: 630 ttcaatctcttctacaa 646
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,352
Number of Sequences: 29161
Number of extensions: 14352
Number of successful extensions: 1168
Number of sequences better than 10.0: 33
length of query: 361
length of database: 44,058,232
effective HSP length: 17
effective length of query: 344
effective length of database: 43,562,495
effective search space: 14985498280
effective search space used: 14985498280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)