BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AI996186.x
         (498 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09225.1  68418.m01047 expressed protein                       406   e-113
At5g04130.1  68418.m00399 DNA topoisomerase, ATP-hydrolyzing...    34   1.1  
At1g19000.2  68414.m02364 myb family transcription factor si...    34   1.1  
At3g24517.1  68416.m03078 hypothetical protein                     32   4.2  
At3g13090.1  68416.m01639 ABC transporter, putative similar ...    32   4.2  

>At5g09225.1 68418.m01047 expressed protein
          Length = 552

 Score =  406 bits (205), Expect = e-113
 Identities = 234/248 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgaaaaatccacagaaactttcaagatttgcnacaatgaatctaagcgcagagnagaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct: 521 tttgaaaaatccacagaaactttcaagatttgctacaatgaatctaagctcagagcagaa 462

                                                                       
Query: 61  atgtgnacatgccttctcagatattcagtaatcagagggtaactagtttctnacaaagag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 461 atgtgaacatgccttctcagatattcagtaatcagagggtaactagtttcttacaaagag 402

                                                                       
Query: 121 gaattctgatttangagactgngaagatgtagngangagttcatcanccaacagntgctt 180
           ||||||||||||| ||||||| |||||||||| || |||||||||| ||||||| |||||
Sbjct: 401 gaattctgatttaagagactgagaagatgtagagaagagttcatcatccaacagatgctt 342

                                                                       
Query: 181 gngtagctttttgtgttgagtttaaggntgcagctgcggcttcacgctcctgccggattc 240
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 341 gagtagctttttgtgttgagtttaaggatgcagctgcggcttcacgctcctgccggattc 282

                   
Query: 241 gctcnctc 248
           |||| |||
Sbjct: 281 gctctctc 274



>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, putative / DNA
            topoisomerase II, putative / DNA gyrase, putative similar
            to SP|O50627 DNA gyrase subunit B (EC 5.99.1.3) {Bacillus
            halodurans}; contains Pfam profiles PF02518: ATPase,
            histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein, PF00204: DNA topoisomerase II (N-terminal
            region), PF00986: DNA gyrase, B subunit, carboxyl
            terminus, PF01751: Toprim domain
          Length = 2515

 Score = 34.2 bits (17), Expect = 1.1
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 270  cagagaaacaaacaaaa 286
            |||||||||||||||||
Sbjct: 2361 cagagaaacaaacaaaa 2345



>At1g19000.2 68414.m02364 myb family transcription factor similar to MybSt1
            GI:7705206 from [Solanum tuberosum]
          Length = 1498

 Score = 34.2 bits (17), Expect = 1.1
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 265  aacaacagagaaacaaa 281
            |||||||||||||||||
Sbjct: 1013 aacaacagagaaacaaa 997



>At3g24517.1 68416.m03078 hypothetical protein
          Length = 492

 Score = 32.2 bits (16), Expect = 4.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 83  attcagtaatcagagg 98
           ||||||||||||||||
Sbjct: 267 attcagtaatcagagg 282



>At3g13090.1 68416.m01639 ABC transporter, putative similar to MRP-like ABC
           transporter [Arabidopsis thaliana] GI:2316016; contains
           Pfam profile: PF00005 ABC transporter
          Length = 4401

 Score = 32.2 bits (16), Expect = 4.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 265 aacaacagagaaacaa 280
           ||||||||||||||||
Sbjct: 523 aacaacagagaaacaa 508



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6542
Number of Sequences: 29161
Number of extensions: 6542
Number of successful extensions: 523
Number of sequences better than 10.0: 7
length of query: 498
length of database: 44,058,232
effective HSP length: 17
effective length of query: 481
effective length of database: 43,562,495
effective search space: 20953560095
effective search space used: 20953560095
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)