BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.2.cl.256.Contig1
(1787 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49215.1 68418.m06092 glycoside hydrolase family 28 prot... 3427 0.0
At3g06770.2 68416.m00804 glycoside hydrolase family 28 prot... 460 e-128
At3g06770.3 68416.m00803 glycoside hydrolase family 28 prot... 460 e-128
At3g06770.1 68416.m00802 glycoside hydrolase family 28 prot... 460 e-128
At3g16850.1 68416.m02151 glycoside hydrolase family 28 prot... 92 2e-17
>At5g49215.1 68418.m06092 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Brassica napus]
GI:1212786; contains PF00295: Glycosyl hydrolases family
28
Length = 1775
Score = 3427 bits (1729), Expect = 0.0
Identities = 1736/1737 (99%), Gaps = 1/1737 (0%)
Strand = Plus / Plus
Query: 2 ggtcattcttctttcttttcacttcttcttcttcttcgctcttcttctcactgtcgggtt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 ggtcattcttctttcttttcacttcttcttcttcttcgctcttcttctcactgtcgggtt 99
Query: 62 ccatttggcgcgaaaagttcttcactttttccagcttttttttgttctctgacagttttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ccatttggcgcgaaaagttcttcactttttccagcttttttttgttctctgacagttttt 159
Query: 122 tttttttgtttggttacaaataaagatgccagtaagtgtggcactagttttgctgttgac 181
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ttttt-tgtttggttacaaataaagatgccagtaagtgtggcactagttttgctgttgac 218
Query: 182 attgagcagtgtgattctgattaatgggagaagttacggcgtcggaaacatatgcgatcg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 attgagcagtgtgattctgattaatgggagaagttacggcgtcggaaacatatgcgatcg 278
Query: 242 tggtcggagaccgagcgagagaccacacagtgtcaaaatcactgattttggtgctgtggg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tggtcggagaccgagcgagagaccacacagtgtcaaaatcactgattttggtgctgtggg 338
Query: 302 agatgggaaaacgttgaacacacttgcgtttcaaaatgctgtcttttatctaaagtcttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agatgggaaaacgttgaacacacttgcgtttcaaaatgctgtcttttatctaaagtcttt 398
Query: 362 cgctgataaaggtggtgctcagctttatgttcctccgggacggtggctcaccggaagttt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cgctgataaaggtggtgctcagctttatgttcctccgggacggtggctcaccggaagttt 458
Query: 422 caacctcaccagtcatctcactctctttctcgagaaagacgccgtcatacttgcctcaca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caacctcaccagtcatctcactctctttctcgagaaagacgccgtcatacttgcctcaca 518
Query: 482 ggatccatcgcattggcaagtcacggatgccttaccgtcatatgggcggggtattgatct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggatccatcgcattggcaagtcacggatgccttaccgtcatatgggcggggtattgatct 578
Query: 542 accagggaagagatacatgagtttgataaacggtgacatgctacatgatgtagtagtaac 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 accagggaagagatacatgagtttgataaacggtgacatgctacatgatgtagtagtaac 638
Query: 602 aggtgataacggtaccatagatgggcaaggccttgtttggtgggatcggtttaattctca 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aggtgataacggtaccatagatgggcaaggccttgtttggtgggatcggtttaattctca 698
Query: 662 ttctttagagtacagtcgccctcaccttgtcgagtttgtctctgccgaaaatgtcattgt 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttctttagagtacagtcgccctcaccttgtcgagtttgtctctgccgaaaatgtcattgt 758
Query: 722 atcaaatcttacattcttgaacgctccggcttatactatccattcagtttattgtcgcaa 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atcaaatcttacattcttgaacgctccggcttatactatccattcagtttattgtcgcaa 818
Query: 782 tttatacattcatagagtaacggctaatacttgtccagaatctccttataccatcggtat 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tttatacattcatagagtaacggctaatacttgtccagaatctccttataccatcggtat 878
Query: 842 tgtcccagattcttctgaaaatgtgtgtatccaagaatctagtatcaacatggggtatga 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tgtcccagattcttctgaaaatgtgtgtatccaagaatctagtatcaacatggggtatga 938
Query: 902 tgccatttctcttaaaagtggttgtgatgaatacggtttatcgtatgcaagacctactgc 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 tgccatttctcttaaaagtggttgtgatgaatacggtttatcgtatgcaagacctactgc 998
Query: 962 taatgtccagataagaaatgtttaccttagagcagcttctggttcctccatttcctttgg 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 taatgtccagataagaaatgtttaccttagagcagcttctggttcctccatttcctttgg 1058
Query: 1022 tagtgaaatgtctggtggtatatctgatgttgaggtcagtgatgctcacatacacaactc 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 tagtgaaatgtctggtggtatatctgatgttgaggtcagtgatgctcacatacacaactc 1118
Query: 1082 gttatccgggattgcctttagaacaacaaatggaagaggtggttatattaaggagattga 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 gttatccgggattgcctttagaacaacaaatggaagaggtggttatattaaggagattga 1178
Query: 1142 tatttccaacatccatatggttaatgttggtactgcatttctagccaacggtagcttcgg 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 tatttccaacatccatatggttaatgttggtactgcatttctagccaacggtagcttcgg 1238
Query: 1202 tactcatccggattctggtttcgatgaaaatgcttacccgcttgtgagtcacatcaggtt 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 tactcatccggattctggtttcgatgaaaatgcttacccgcttgtgagtcacatcaggtt 1298
Query: 1262 acatgacattgttggagaaaacataagcactgctggatatttctttggaacgaaagagtc 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 acatgacattgttggagaaaacataagcactgctggatatttctttggaacgaaagagtc 1358
Query: 1322 tcctttcacttcgattttgttatcgaatatctctctgtcgattaaaaactcggcttcccc 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 tcctttcacttcgattttgttatcgaatatctctctgtcgattaaaaactcggcttcccc 1418
Query: 1382 tgctgattcttggcaatgctcatatgttgacgggtcttcggaattcgtagtccctgaacc 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 tgctgattcttggcaatgctcatatgttgacgggtcttcggaattcgtagtccctgaacc 1478
Query: 1442 gtgccttgagctgaagagttttgatagttactatggtagagctgaggccttatgaaacca 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 gtgccttgagctgaagagttttgatagttactatggtagagctgaggccttatgaaacca 1538
Query: 1502 aacttcattaggaatgatgattcatatttgtttaagagagagcaaatggttctgattctt 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 aacttcattaggaatgatgattcatatttgtttaagagagagcaaatggttctgattctt 1598
Query: 1562 ttcttttccccaaaaataaaccacagtgtgtagaattattacctgttccttgttggtgtt 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 ttcttttccccaaaaataaaccacagtgtgtagaattattacctgttccttgttggtgtt 1658
Query: 1622 gttgtccctgttatttgcagcttgtgagattaatatatcttgtacaggttcatttcttca 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 gttgtccctgttatttgcagcttgtgagattaatatatcttgtacaggttcatttcttca 1718
Query: 1682 ttcatgtgtaaccaaagaaattttgtattagcccagtaaccagatattaattttttt 1738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 ttcatgtgtaaccaaagaaattttgtattagcccagtaaccagatattaattttttt 1775
>At3g06770.2 68416.m00804 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 1855
Score = 460 bits (232), Expect = e-128
Identities = 733/900 (81%)
Strand = Plus / Plus
Query: 261 agaccacacagtgtcaaaatcactgattttggtgctgtgggagatgggaaaacgttgaac 320
||||||||||||||| || || |||||||| ||||| |||||||| |||||| | |||
Sbjct: 310 agaccacacagtgtctccattacagattttggagctgttggagatggcaaaacgctcaac 369
Query: 321 acacttgcgtttcaaaatgctgtcttttatctaaagtctttcgctgataaaggtggtgct 380
|| |||||||||||||| || || || ||||| | ||||||||| || |||||||| ||
Sbjct: 370 actcttgcgtttcaaaacgccgttttctatcttatgtctttcgccgacaaaggtggggcc 429
Query: 381 cagctttatgttcctccgggacggtggctcaccggaagtttcaacctcaccagtcatctc 440
||||| |||||||| ||||||| ||||||||||| ||||| | ||||||||| || |||
Sbjct: 430 cagctctatgttccgccgggacattggctcaccgggagttttagcctcaccagccacctc 489
Query: 441 actctctttctcgagaaagacgccgtcatacttgcctcacaggatccatcgcattggcaa 500
|||||||||||||| || | |||||| ||| | || || |||||||||||||||||| ||
Sbjct: 490 actctctttctcgaaaacggcgccgttatagtcgcttctcaggatccatcgcattgggaa 549
Query: 501 gtcacggatgccttaccgtcatatgggcggggtattgatctaccagggaagagatacatg 560
|| ||| | ||||| ||||| || |||| |||||| | || |||||| |||||| |
Sbjct: 550 gtggttgatcctttaccttcatacggaaggggaattgatttgcctgggaagcgatacaag 609
Query: 561 agtttgataaacggtgacatgctacatgatgtagtagtaacaggtgataacggtaccata 620
|||||||| |||||| ||| |||||||||||| || |||||||||||||| || || |||
Sbjct: 610 agtttgatcaacggtaacaagctacatgatgttgttgtaacaggtgataatggaactata 669
Query: 621 gatgggcaaggccttgtttggtgggatcggtttaattctcattctttagagtacagtcgc 680
||||| |||||| | ||||||||||||||||||| ||||||||| ||| |||| | ||
Sbjct: 670 gatggtcaaggcttggtttggtgggatcggtttacttctcattccttaaagtataaccgt 729
Query: 681 cctcaccttgtcgagtttgtctctgccgaaaatgtcattgtatcaaatcttacattcttg 740
|||||||| |||||||| | ||| | |||||||| ||||| || |||||||| ||||||
Sbjct: 730 cctcacctcatcgagtttctttcttctgaaaatgtaattgtctccaatcttacgttcttg 789
Query: 741 aacgctccggcttatactatccattcagtttattgtcgcaatttatacattcatagagta 800
|| ||||| |||||| | ||| ||||| | || | | || || |||| ||||||| ||
Sbjct: 790 aatgctcctgcttattcaatctattcaatctactctagccatgtatatattcataagata 849
Query: 801 acggctaatacttgtccagaatctccttataccatcggtattgtcccagattcttctgaa 860
||| || ||| ||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 850 ttggcccattcttctcctaaatctccttatacaatcggtattgtaccagattcttctgat 909
Query: 861 aatgtgtgtatccaagaatctagtatcaacatggggtatgatgccatttctcttaaaagt 920
| || || |||||| | |||| || ||| |||||||||| || ||||| || |||||
Sbjct: 910 tacgtctgcatccaaaactctaccattaacgtggggtatgacgcgatttccctcaaaagc 969
Query: 921 ggttgtgatgaatacggtttatcgtatgcaagacctactgctaatgtccagataagaaat 980
||||| |||||||| || | | ||| | | || |||| ||||| || |||||||||
Sbjct: 970 ggttgggatgaatatggaattgcctattctcgtcccactgaaaatgttcatataagaaat 1029
Query: 981 gtttaccttagagcagcttctggttcctccatttcctttggtagtgaaatgtctggtggt 1040
|| |||||| ||| ||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 1030 gtgtaccttcgaggagcttctggttcctctatctcctttggcagtgaaatgtctggtgga 1089
Query: 1041 atatctgatgttgaggtcagtgatgctcacatacacaactcgttatccgggattgccttt 1100
||||||||||| | ||| | | ||||| |||||| |||||||| |||| |||||||||
Sbjct: 1090 atatctgatgtcgtggttgataacgctcatatacactactcgttaaccggcattgccttt 1149
Query: 1101 agaacaacaaatggaagaggtggttatattaaggagattgatatttccaacatccatatg 1160
||||| ||||| || |||||||||||||| || ||||| |||||||| |||||| |||||
Sbjct: 1150 agaaccacaaaaggcagaggtggttatatcaaagagatcgatatttcaaacatcgatatg 1209
Score = 83.8 bits (42), Expect = 5e-15
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 1662 tgtacaggttcatttcttcattcatgtgtaaccaaagaaattttgt 1707
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1756 tgtacaggttcatttcttcattcatgtgtaaacaaagaaattttgt 1801
Score = 58.0 bits (29), Expect = 3e-07
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 53 tgtcgggttccatttggcgcgaaaagttcttcacttt 89
|||| |||| |||||||||||||||||||||||||||
Sbjct: 110 tgtctggttacatttggcgcgaaaagttcttcacttt 146
Score = 40.1 bits (20), Expect = 0.064
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 1388 ttcttggcaatgctcatatgttgacgggtcttcggaattcgtagtccctgaaccgtgcct 1447
||||||||||||||| || ||| ||||||| ||||| | || | ||||||||||| |
Sbjct: 1431 ttcttggcaatgctcctacgtttacgggtcctcggagtcagtcattcctgaaccgtgtcc 1490
Query: 1448 tgagctgaagag 1459
|||||||||||
Sbjct: 1491 cgagctgaagag 1502
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1760 aaaaaaaaaaagaaaaaaaaa 1780
|||| ||||||||||||||||
Sbjct: 1550 aaaagaaaaaagaaaaaaaaa 1570
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 134 gttacaaataaagatgccagt 154
|||||||||||||||| ||||
Sbjct: 183 gttacaaataaagatgtcagt 203
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1767 aaaagaaaaaaaaaaaaaaaa 1787
||||||||||| |||||||||
Sbjct: 1550 aaaagaaaaaagaaaaaaaaa 1570
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1242 cttgtgagtcacatcag 1258
|||||||||||||||||
Sbjct: 1291 cttgtgagtcacatcag 1307
>At3g06770.3 68416.m00803 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 1749
Score = 460 bits (232), Expect = e-128
Identities = 733/900 (81%)
Strand = Plus / Plus
Query: 261 agaccacacagtgtcaaaatcactgattttggtgctgtgggagatgggaaaacgttgaac 320
||||||||||||||| || || |||||||| ||||| |||||||| |||||| | |||
Sbjct: 204 agaccacacagtgtctccattacagattttggagctgttggagatggcaaaacgctcaac 263
Query: 321 acacttgcgtttcaaaatgctgtcttttatctaaagtctttcgctgataaaggtggtgct 380
|| |||||||||||||| || || || ||||| | ||||||||| || |||||||| ||
Sbjct: 264 actcttgcgtttcaaaacgccgttttctatcttatgtctttcgccgacaaaggtggggcc 323
Query: 381 cagctttatgttcctccgggacggtggctcaccggaagtttcaacctcaccagtcatctc 440
||||| |||||||| ||||||| ||||||||||| ||||| | ||||||||| || |||
Sbjct: 324 cagctctatgttccgccgggacattggctcaccgggagttttagcctcaccagccacctc 383
Query: 441 actctctttctcgagaaagacgccgtcatacttgcctcacaggatccatcgcattggcaa 500
|||||||||||||| || | |||||| ||| | || || |||||||||||||||||| ||
Sbjct: 384 actctctttctcgaaaacggcgccgttatagtcgcttctcaggatccatcgcattgggaa 443
Query: 501 gtcacggatgccttaccgtcatatgggcggggtattgatctaccagggaagagatacatg 560
|| ||| | ||||| ||||| || |||| |||||| | || |||||| |||||| |
Sbjct: 444 gtggttgatcctttaccttcatacggaaggggaattgatttgcctgggaagcgatacaag 503
Query: 561 agtttgataaacggtgacatgctacatgatgtagtagtaacaggtgataacggtaccata 620
|||||||| |||||| ||| |||||||||||| || |||||||||||||| || || |||
Sbjct: 504 agtttgatcaacggtaacaagctacatgatgttgttgtaacaggtgataatggaactata 563
Query: 621 gatgggcaaggccttgtttggtgggatcggtttaattctcattctttagagtacagtcgc 680
||||| |||||| | ||||||||||||||||||| ||||||||| ||| |||| | ||
Sbjct: 564 gatggtcaaggcttggtttggtgggatcggtttacttctcattccttaaagtataaccgt 623
Query: 681 cctcaccttgtcgagtttgtctctgccgaaaatgtcattgtatcaaatcttacattcttg 740
|||||||| |||||||| | ||| | |||||||| ||||| || |||||||| ||||||
Sbjct: 624 cctcacctcatcgagtttctttcttctgaaaatgtaattgtctccaatcttacgttcttg 683
Query: 741 aacgctccggcttatactatccattcagtttattgtcgcaatttatacattcatagagta 800
|| ||||| |||||| | ||| ||||| | || | | || || |||| ||||||| ||
Sbjct: 684 aatgctcctgcttattcaatctattcaatctactctagccatgtatatattcataagata 743
Query: 801 acggctaatacttgtccagaatctccttataccatcggtattgtcccagattcttctgaa 860
||| || ||| ||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 744 ttggcccattcttctcctaaatctccttatacaatcggtattgtaccagattcttctgat 803
Query: 861 aatgtgtgtatccaagaatctagtatcaacatggggtatgatgccatttctcttaaaagt 920
| || || |||||| | |||| || ||| |||||||||| || ||||| || |||||
Sbjct: 804 tacgtctgcatccaaaactctaccattaacgtggggtatgacgcgatttccctcaaaagc 863
Query: 921 ggttgtgatgaatacggtttatcgtatgcaagacctactgctaatgtccagataagaaat 980
||||| |||||||| || | | ||| | | || |||| ||||| || |||||||||
Sbjct: 864 ggttgggatgaatatggaattgcctattctcgtcccactgaaaatgttcatataagaaat 923
Query: 981 gtttaccttagagcagcttctggttcctccatttcctttggtagtgaaatgtctggtggt 1040
|| |||||| ||| ||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 924 gtgtaccttcgaggagcttctggttcctctatctcctttggcagtgaaatgtctggtgga 983
Query: 1041 atatctgatgttgaggtcagtgatgctcacatacacaactcgttatccgggattgccttt 1100
||||||||||| | ||| | | ||||| |||||| |||||||| |||| |||||||||
Sbjct: 984 atatctgatgtcgtggttgataacgctcatatacactactcgttaaccggcattgccttt 1043
Query: 1101 agaacaacaaatggaagaggtggttatattaaggagattgatatttccaacatccatatg 1160
||||| ||||| || |||||||||||||| || ||||| |||||||| |||||| |||||
Sbjct: 1044 agaaccacaaaaggcagaggtggttatatcaaagagatcgatatttcaaacatcgatatg 1103
Score = 83.8 bits (42), Expect = 5e-15
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 1662 tgtacaggttcatttcttcattcatgtgtaaccaaagaaattttgt 1707
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1650 tgtacaggttcatttcttcattcatgtgtaaacaaagaaattttgt 1695
Score = 40.1 bits (20), Expect = 0.064
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 1388 ttcttggcaatgctcatatgttgacgggtcttcggaattcgtagtccctgaaccgtgcct 1447
||||||||||||||| || ||| ||||||| ||||| | || | ||||||||||| |
Sbjct: 1325 ttcttggcaatgctcctacgtttacgggtcctcggagtcagtcattcctgaaccgtgtcc 1384
Query: 1448 tgagctgaagag 1459
|||||||||||
Sbjct: 1385 cgagctgaagag 1396
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1767 aaaagaaaaaaaaaaaaaaaa 1787
||||||||||| |||||||||
Sbjct: 1444 aaaagaaaaaagaaaaaaaaa 1464
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1242 cttgtgagtcacatcag 1258
|||||||||||||||||
Sbjct: 1185 cttgtgagtcacatcag 1201
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1760 aaaaaaaaaaagaaaaaaaaa 1780
|||| ||||||||||||||||
Sbjct: 1444 aaaagaaaaaagaaaaaaaaa 1464
>At3g06770.1 68416.m00802 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Persea americana]
GI:166951; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 1705
Score = 460 bits (232), Expect = e-128
Identities = 733/900 (81%)
Strand = Plus / Plus
Query: 261 agaccacacagtgtcaaaatcactgattttggtgctgtgggagatgggaaaacgttgaac 320
||||||||||||||| || || |||||||| ||||| |||||||| |||||| | |||
Sbjct: 160 agaccacacagtgtctccattacagattttggagctgttggagatggcaaaacgctcaac 219
Query: 321 acacttgcgtttcaaaatgctgtcttttatctaaagtctttcgctgataaaggtggtgct 380
|| |||||||||||||| || || || ||||| | ||||||||| || |||||||| ||
Sbjct: 220 actcttgcgtttcaaaacgccgttttctatcttatgtctttcgccgacaaaggtggggcc 279
Query: 381 cagctttatgttcctccgggacggtggctcaccggaagtttcaacctcaccagtcatctc 440
||||| |||||||| ||||||| ||||||||||| ||||| | ||||||||| || |||
Sbjct: 280 cagctctatgttccgccgggacattggctcaccgggagttttagcctcaccagccacctc 339
Query: 441 actctctttctcgagaaagacgccgtcatacttgcctcacaggatccatcgcattggcaa 500
|||||||||||||| || | |||||| ||| | || || |||||||||||||||||| ||
Sbjct: 340 actctctttctcgaaaacggcgccgttatagtcgcttctcaggatccatcgcattgggaa 399
Query: 501 gtcacggatgccttaccgtcatatgggcggggtattgatctaccagggaagagatacatg 560
|| ||| | ||||| ||||| || |||| |||||| | || |||||| |||||| |
Sbjct: 400 gtggttgatcctttaccttcatacggaaggggaattgatttgcctgggaagcgatacaag 459
Query: 561 agtttgataaacggtgacatgctacatgatgtagtagtaacaggtgataacggtaccata 620
|||||||| |||||| ||| |||||||||||| || |||||||||||||| || || |||
Sbjct: 460 agtttgatcaacggtaacaagctacatgatgttgttgtaacaggtgataatggaactata 519
Query: 621 gatgggcaaggccttgtttggtgggatcggtttaattctcattctttagagtacagtcgc 680
||||| |||||| | ||||||||||||||||||| ||||||||| ||| |||| | ||
Sbjct: 520 gatggtcaaggcttggtttggtgggatcggtttacttctcattccttaaagtataaccgt 579
Query: 681 cctcaccttgtcgagtttgtctctgccgaaaatgtcattgtatcaaatcttacattcttg 740
|||||||| |||||||| | ||| | |||||||| ||||| || |||||||| ||||||
Sbjct: 580 cctcacctcatcgagtttctttcttctgaaaatgtaattgtctccaatcttacgttcttg 639
Query: 741 aacgctccggcttatactatccattcagtttattgtcgcaatttatacattcatagagta 800
|| ||||| |||||| | ||| ||||| | || | | || || |||| ||||||| ||
Sbjct: 640 aatgctcctgcttattcaatctattcaatctactctagccatgtatatattcataagata 699
Query: 801 acggctaatacttgtccagaatctccttataccatcggtattgtcccagattcttctgaa 860
||| || ||| ||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 700 ttggcccattcttctcctaaatctccttatacaatcggtattgtaccagattcttctgat 759
Query: 861 aatgtgtgtatccaagaatctagtatcaacatggggtatgatgccatttctcttaaaagt 920
| || || |||||| | |||| || ||| |||||||||| || ||||| || |||||
Sbjct: 760 tacgtctgcatccaaaactctaccattaacgtggggtatgacgcgatttccctcaaaagc 819
Query: 921 ggttgtgatgaatacggtttatcgtatgcaagacctactgctaatgtccagataagaaat 980
||||| |||||||| || | | ||| | | || |||| ||||| || |||||||||
Sbjct: 820 ggttgggatgaatatggaattgcctattctcgtcccactgaaaatgttcatataagaaat 879
Query: 981 gtttaccttagagcagcttctggttcctccatttcctttggtagtgaaatgtctggtggt 1040
|| |||||| ||| ||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 880 gtgtaccttcgaggagcttctggttcctctatctcctttggcagtgaaatgtctggtgga 939
Query: 1041 atatctgatgttgaggtcagtgatgctcacatacacaactcgttatccgggattgccttt 1100
||||||||||| | ||| | | ||||| |||||| |||||||| |||| |||||||||
Sbjct: 940 atatctgatgtcgtggttgataacgctcatatacactactcgttaaccggcattgccttt 999
Query: 1101 agaacaacaaatggaagaggtggttatattaaggagattgatatttccaacatccatatg 1160
||||| ||||| || |||||||||||||| || ||||| |||||||| |||||| |||||
Sbjct: 1000 agaaccacaaaaggcagaggtggttatatcaaagagatcgatatttcaaacatcgatatg 1059
Score = 83.8 bits (42), Expect = 5e-15
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 1662 tgtacaggttcatttcttcattcatgtgtaaccaaagaaattttgt 1707
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1606 tgtacaggttcatttcttcattcatgtgtaaacaaagaaattttgt 1651
Score = 40.1 bits (20), Expect = 0.064
Identities = 59/72 (81%)
Strand = Plus / Plus
Query: 1388 ttcttggcaatgctcatatgttgacgggtcttcggaattcgtagtccctgaaccgtgcct 1447
||||||||||||||| || ||| ||||||| ||||| | || | ||||||||||| |
Sbjct: 1281 ttcttggcaatgctcctacgtttacgggtcctcggagtcagtcattcctgaaccgtgtcc 1340
Query: 1448 tgagctgaagag 1459
|||||||||||
Sbjct: 1341 cgagctgaagag 1352
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1767 aaaagaaaaaaaaaaaaaaaa 1787
||||||||||| |||||||||
Sbjct: 1400 aaaagaaaaaagaaaaaaaaa 1420
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1242 cttgtgagtcacatcag 1258
|||||||||||||||||
Sbjct: 1141 cttgtgagtcacatcag 1157
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1760 aaaaaaaaaaagaaaaaaaaa 1780
|||| ||||||||||||||||
Sbjct: 1400 aaaagaaaaaagaaaaaaaaa 1420
>At3g16850.1 68416.m02151 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to SP|P05117 Polygalacturonase 2A precursor
(EC 3.2.1.15) (Pectinase) {Lycopersicon esculentum};
contains PF00295: Glycosyl hydrolases family 28
Length = 1802
Score = 91.7 bits (46), Expect = 2e-17
Identities = 94/110 (85%)
Strand = Plus / Plus
Query: 339 gctgtcttttatctaaagtctttcgctgataaaggtggtgctcagctttatgttcctccg 398
||||| || ||||| |||||||| || |||||||| |||||||||||||||||||| ||
Sbjct: 302 gctgttttctatctcaagtcttttgcggataaaggcggtgctcagctttatgttccacca 361
Query: 399 ggacggtggctcaccggaagtttcaacctcaccagtcatctcactctctt 448
|| |||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct: 362 gggaaatggctcaccggaagcttcaatctcacaagccatctcactctctt 411
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147,158
Number of Sequences: 29161
Number of extensions: 147158
Number of successful extensions: 23466
Number of sequences better than 10.0: 864
length of query: 1787
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1769
effective length of database: 43,533,334
effective search space: 77010467846
effective search space used: 77010467846
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)