BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE529549.f
(245 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19110.2 68417.m02820 protein kinase, putative contains ... 391 e-108
At4g19110.1 68417.m02819 protein kinase, putative contains ... 391 e-108
At5g45430.1 68418.m05582 protein kinase, putative contains ... 42 0.002
At5g25070.1 68418.m02971 expressed protein 38 0.033
At4g12810.1 68417.m02009 F-box family protein similar to F-... 36 0.13
>At4g19110.2 68417.m02820 protein kinase, putative contains protein kinase
domain, Pfam:PF00069
Length = 2544
Score = 391 bits (197), Expect = e-108
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 1 cctctttgttcctctctttcatatcttgttcttatgggtgctggttgaagaaagatacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cctctttgttcctctctttcatatcttgttcttatgggtgctggttgaagaaagatacat 542
Query: 61 caatttcttttctttttcagtttacaaatgtcgtttccttgagtctgaacccctgagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 caatttcttttctttttcagtttacaaatgtcgtttccttgagtctgaacccctgagtga 602
Query: 121 gatgttgtgagcatagggtccttcctattagccaaaacagtctttcttgttggttccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gatgttgtgagcatagggtccttcctattagccaaaacagtctttcttgttggttccttc 662
Query: 181 gcgtctttgagttctca 197
|||||||||||||||||
Sbjct: 663 gcgtctttgagttctca 679
Score = 95.6 bits (48), Expect = 2e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 198 ctggagaatcattgattttactgccttggtgtcaagtacttcctacga 245
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctggagaatcattgattttactgccttggtgtcaagtacttcctacga 817
>At4g19110.1 68417.m02819 protein kinase, putative contains protein kinase
domain, Pfam:PF00069
Length = 2535
Score = 391 bits (197), Expect = e-108
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 1 cctctttgttcctctctttcatatcttgttcttatgggtgctggttgaagaaagatacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cctctttgttcctctctttcatatcttgttcttatgggtgctggttgaagaaagatacat 542
Query: 61 caatttcttttctttttcagtttacaaatgtcgtttccttgagtctgaacccctgagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 caatttcttttctttttcagtttacaaatgtcgtttccttgagtctgaacccctgagtga 602
Query: 121 gatgttgtgagcatagggtccttcctattagccaaaacagtctttcttgttggttccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gatgttgtgagcatagggtccttcctattagccaaaacagtctttcttgttggttccttc 662
Query: 181 gcgtctttgagttctca 197
|||||||||||||||||
Sbjct: 663 gcgtctttgagttctca 679
Score = 95.6 bits (48), Expect = 2e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 198 ctggagaatcattgattttactgccttggtgtcaagtacttcctacga 245
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctggagaatcattgattttactgccttggtgtcaagtacttcctacga 817
>At5g45430.1 68418.m05582 protein kinase, putative contains similarity to male
germ cell-associated kinase [Homo sapiens]
gi|23268497|gb|AAN16405
Length = 2635
Score = 42.1 bits (21), Expect = 0.002
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 104 tctgaacccct-gagtgagatgttgtgagcata 135
||||||||||| |||||| ||||||||||||||
Sbjct: 566 tctgaaccccttgagtgaaatgttgtgagcata 598
Score = 30.2 bits (15), Expect = 7.9
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 200 ggagaatcattgattttactgcc 222
|||||||||||||| || |||||
Sbjct: 754 ggagaatcattgatcttgctgcc 776
>At5g25070.1 68418.m02971 expressed protein
Length = 2494
Score = 38.2 bits (19), Expect = 0.033
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 13 tctctttcatatcttgttc 31
|||||||||||||||||||
Sbjct: 1155 tctctttcatatcttgttc 1137
>At4g12810.1 68417.m02009 F-box family protein similar to F-box protein family,
AtFBX7 (GI:20197899) [Arabidopsis thaliana]
Length = 1149
Score = 36.2 bits (18), Expect = 0.13
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 193 tctcactggagaatcatt 210
||||||||||||||||||
Sbjct: 699 tctcactggagaatcatt 682
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,992
Number of Sequences: 29161
Number of extensions: 10992
Number of successful extensions: 1046
Number of sequences better than 10.0: 105
length of query: 245
length of database: 44,058,232
effective HSP length: 16
effective length of query: 229
effective length of database: 43,591,656
effective search space: 9982489224
effective search space used: 9982489224
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)