BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU229108_RAFL16_73_C22.r
(441 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19110.2 68417.m02820 protein kinase, putative contains ... 858 0.0
At4g19110.1 68417.m02819 protein kinase, putative contains ... 858 0.0
At5g45430.1 68418.m05582 protein kinase, putative contains ... 62 4e-09
At5g25070.1 68418.m02971 expressed protein 38 0.060
At4g32830.1 68417.m04669 protein kinase, putative similar t... 38 0.060
>At4g19110.2 68417.m02820 protein kinase, putative contains protein kinase
domain, Pfam:PF00069
Length = 2544
Score = 858 bits (433), Expect = 0.0
Identities = 439/441 (99%)
Strand = Plus / Minus
Query: 1 ggttaagcaaagtagcctctttatattatgtaagtaaagaacttctgaaagatttatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ggttaagcaaagtagcctctttatattatgtaagtaaagaacttctgaaagatttatata 837
Query: 61 gcattaatcttccagtcgttcgtaggaagtacttgacaccaaggcagtaaaatcaatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gcattaatcttccagtcgttcgtaggaagtacttgacaccaaggcagtaaaatcaatgat 777
Query: 121 tctccagctgggtagagtgaccgttatttacttcgaacataaaggggttgaccatttagg 180
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 776 tctccagctgggtagactgaccgttatttacttcgaacataaacgggttgaccatttagg 717
Query: 181 caaaagaaagagagcaagagaagaggaaaacacatactgagaactcaaagacgcgaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 caaaagaaagagagcaagagaagaggaaaacacatactgagaactcaaagacgcgaagga 657
Query: 241 accaacaagaaagactgttttggctaataggaaggaccctatgctcacaacatctcactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 accaacaagaaagactgttttggctaataggaaggaccctatgctcacaacatctcactc 597
Query: 301 aggggttcagactcaaggaaacgacatttgtaaactgaaaaagaaaagaaattgatgtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aggggttcagactcaaggaaacgacatttgtaaactgaaaaagaaaagaaattgatgtat 537
Query: 361 ctttcttcaaccagcacccataagaacaagatatgaaagagaggaacaaagaggtttctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctttcttcaaccagcacccataagaacaagatatgaaagagaggaacaaagaggtttctc 477
Query: 421 taggactatgcgaaggaagaa 441
|||||||||||||||||||||
Sbjct: 476 taggactatgcgaaggaagaa 456
>At4g19110.1 68417.m02819 protein kinase, putative contains protein kinase
domain, Pfam:PF00069
Length = 2535
Score = 858 bits (433), Expect = 0.0
Identities = 439/441 (99%)
Strand = Plus / Minus
Query: 1 ggttaagcaaagtagcctctttatattatgtaagtaaagaacttctgaaagatttatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ggttaagcaaagtagcctctttatattatgtaagtaaagaacttctgaaagatttatata 837
Query: 61 gcattaatcttccagtcgttcgtaggaagtacttgacaccaaggcagtaaaatcaatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gcattaatcttccagtcgttcgtaggaagtacttgacaccaaggcagtaaaatcaatgat 777
Query: 121 tctccagctgggtagagtgaccgttatttacttcgaacataaaggggttgaccatttagg 180
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 776 tctccagctgggtagactgaccgttatttacttcgaacataaacgggttgaccatttagg 717
Query: 181 caaaagaaagagagcaagagaagaggaaaacacatactgagaactcaaagacgcgaagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 caaaagaaagagagcaagagaagaggaaaacacatactgagaactcaaagacgcgaagga 657
Query: 241 accaacaagaaagactgttttggctaataggaaggaccctatgctcacaacatctcactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 accaacaagaaagactgttttggctaataggaaggaccctatgctcacaacatctcactc 597
Query: 301 aggggttcagactcaaggaaacgacatttgtaaactgaaaaagaaaagaaattgatgtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aggggttcagactcaaggaaacgacatttgtaaactgaaaaagaaaagaaattgatgtat 537
Query: 361 ctttcttcaaccagcacccataagaacaagatatgaaagagaggaacaaagaggtttctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctttcttcaaccagcacccataagaacaagatatgaaagagaggaacaaagaggtttctc 477
Query: 421 taggactatgcgaaggaagaa 441
|||||||||||||||||||||
Sbjct: 476 taggactatgcgaaggaagaa 456
>At5g45430.1 68418.m05582 protein kinase, putative contains similarity to male
germ cell-associated kinase [Homo sapiens]
gi|23268497|gb|AAN16405
Length = 2635
Score = 61.9 bits (31), Expect = 4e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 103 ggcagtaaaatcaatgattctccagctgggtagagtgaccgttatttactt 153
||||| || |||||||||||||| |||||||||| ||||| ||||||||||
Sbjct: 776 ggcagcaagatcaatgattctcccgctgggtagactgacccttatttactt 726
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 34 gtaaagaacttctgaaagatttatatagcattaatcttccagtcgttcgta 84
||||||||||||||||| || | ||| | ||||||||||||| |||||||
Sbjct: 828 gtaaagaacttctgaaatatgtctatcactttaatcttccagttgttcgta 778
Score = 42.1 bits (21), Expect = 0.004
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 280 tatgctcacaacatctcactc-aggggttcaga 311
|||||||||||||| |||||| |||||||||||
Sbjct: 598 tatgctcacaacatttcactcaaggggttcaga 566
>At5g25070.1 68418.m02971 expressed protein
Length = 2494
Score = 38.2 bits (19), Expect = 0.060
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 384 gaacaagatatgaaagaga 402
|||||||||||||||||||
Sbjct: 1137 gaacaagatatgaaagaga 1155
>At4g32830.1 68417.m04669 protein kinase, putative similar to protein kinase
p46XlEg22 [Xenopus laevis] gi|609280|emb|CAA78914;
contains protein kinase domain, Pfam:PF00069
Length = 1171
Score = 38.2 bits (19), Expect = 0.060
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 183 aaagaaagagagcaagaga 201
|||||||||||||||||||
Sbjct: 83 aaagaaagagagcaagaga 65
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,515
Number of Sequences: 29161
Number of extensions: 18515
Number of successful extensions: 1724
Number of sequences better than 10.0: 47
length of query: 441
length of database: 44,058,232
effective HSP length: 17
effective length of query: 424
effective length of database: 43,562,495
effective search space: 18470497880
effective search space used: 18470497880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)