BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX836985.f
(679 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23480.2 68414.m02946 glycosyl transferase family 2 prot... 571 e-162
At1g23480.1 68414.m02945 glycosyl transferase family 2 prot... 492 e-138
At1g76400.1 68414.m08878 ribophorin I family protein simila... 38 0.094
At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1... 38 0.094
At5g55250.1 68418.m06886 S-adenosyl-L-methionine:carboxyl m... 36 0.37
>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein similar to
cellulose synthase from Agrobacterium tumeficiens
[gi:710492] and Agrobacterium radiobacter [gi:710493];
contains Pfam glycosyl transferase, group 2 family
protein domain PF00535 isoform contains GG acceptor
splice site at intron 1
Length = 2120
Score = 571 bits (288), Expect = e-162
Identities = 288/288 (100%)
Strand = Plus / Plus
Query: 1 cttaaagttgtttatagtttagacaataataataggagatgaagagaatgtgatgctact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cttaaagttgtttatagtttagacaataataataggagatgaagagaatgtgatgctact 124
Query: 61 aactcttatttaaatgaggaatataaacaagatctggtcctgacattgttatgaatcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aactcttatttaaatgaggaatataaacaagatctggtcctgacattgttatgaatcttc 184
Query: 121 aaactcaggacacaaaccaagatctcgtgtagaggaaaaaaaacctttcctccatgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aaactcaggacacaaaccaagatctcgtgtagaggaaaaaaaacctttcctccatgttta 244
Query: 181 agttttgagcttctggttggtttcaagtcctgtggagaaaaatgtcaccatttttgaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agttttgagcttctggttggtttcaagtcctgtggagaaaaatgtcaccatttttgaagt 304
Query: 241 tctttctctttctctatgattatctttcaccttcctctttctttctgg 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tctttctctttctctatgattatctttcaccttcctctttctttctgg 352
Score = 507 bits (256), Expect = e-143
Identities = 275/280 (98%), Gaps = 1/280 (0%)
Strand = Plus / Plus
Query: 378 gggtttaaggtcgaaagaaataccttaggagcatcattagatactacagatggggttgtg 437
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gggtttaaggtccaaagaaataccttaggagcatcattagatactacagatggggttgtg 410
Query: 438 agaagtggcataattggagagattatatacatttggaagcagacaagaatctttgtcttt 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agaagtggcataattggagagattatatacatttggaagcagacaagaatctttgtcttt 470
Query: 498 ataccaatcttgaaatgcttagtgacaatatgtttggtaatgtcccttttgttgttcata 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ataccaatcttgaaatgcttagtgacaatatgtttggtaatgtcccttttgttgttcata 530
Query: 558 gaaagagtttatatgagcatagtagtagtgtttgtgaaattacttagacgaacacctgag 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gaaagagtttatatgagcatagtagtagtgtttgtgaaattacttagacgaacacctgag 590
Query: 618 aaagttacacaagtgggaacctataagcgaaaatgacctt 657
|||| ||||||||||||||||||||| ||| ||||||||
Sbjct: 591 aaag-tacacaagtgggaacctataaacgatgatgacctt 629
>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein similar to
cellulose synthase from Agrobacterium tumeficiens
[gi:710492] and Agrobacterium radiobacter [gi:710493];
contains Pfam glycosyl transferase, group 2 family
protein domain PF00535 isoform contains GG acceptor
splice site at intron 1
Length = 2015
Score = 492 bits (248), Expect = e-138
Identities = 267/272 (98%), Gaps = 1/272 (0%)
Strand = Plus / Plus
Query: 386 ggtcgaaagaaataccttaggagcatcattagatactacagatggggttgtgagaagtgg 445
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggtccaaagaaataccttaggagcatcattagatactacagatggggttgtgagaagtgg 314
Query: 446 cataattggagagattatatacatttggaagcagacaagaatctttgtctttataccaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cataattggagagattatatacatttggaagcagacaagaatctttgtctttataccaat 374
Query: 506 cttgaaatgcttagtgacaatatgtttggtaatgtcccttttgttgttcatagaaagagt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttgaaatgcttagtgacaatatgtttggtaatgtcccttttgttgttcatagaaagagt 434
Query: 566 ttatatgagcatagtagtagtgtttgtgaaattacttagacgaacacctgagaaagttac 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 435 ttatatgagcatagtagtagtgtttgtgaaattacttagacgaacacctgagaaag-tac 493
Query: 626 acaagtgggaacctataagcgaaaatgacctt 657
|||||||||||||||||| ||| ||||||||
Sbjct: 494 acaagtgggaacctataaacgatgatgacctt 525
Score = 323 bits (163), Expect = 1e-87
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 127 aggacacaaaccaagatctcgtgtagaggaaaaaaaacctttcctccatgtttaagtttt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aggacacaaaccaagatctcgtgtagaggaaaaaaaacctttcctccatgtttaagtttt 154
Query: 187 gagcttctggttggtttcaagtcctgtggagaaaaatgtcaccatttttgaagttctttc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gagcttctggttggtttcaagtcctgtggagaaaaatgtcaccatttttgaagttctttc 214
Query: 247 tctttctctatgattatctttcaccttcctctttctttctggt 289
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tctttctctatgattatctttcaccttcctctttctttctggt 257
>At1g76400.1 68414.m08878 ribophorin I family protein similar to ribophorin I [Sus
scrofa] GI:9857227; contains Pfam profile PF04597:
Ribophorin I
Length = 2364
Score = 38.2 bits (19), Expect = 0.094
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 234 ttgaagttctttctctttc 252
|||||||||||||||||||
Sbjct: 1727 ttgaagttctttctctttc 1709
>At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1) contains Pfam
PF02365: No apical meristem (NAM) domain; identical to
NAC1 GB:AAF21437 GI:6649236 from [Arabidopsis thaliana]
Length = 1353
Score = 38.2 bits (19), Expect = 0.094
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 348 atttaatcctttttttttcttggtttt 374
|||| ||||||||||||||| ||||||
Sbjct: 96 atttgatcctttttttttctaggtttt 70
>At5g55250.1 68418.m06886 S-adenosyl-L-methionine:carboxyl methyltransferase
family protein similar to SAM:jasmonic acid carboxyl
methyltransferase (JMT)[GI:13676829] and to SAM:benzoic
acid carboxyl methyltransferase
(BAMT)[GI:9789277][Antirrhinum majus]
Length = 1291
Score = 36.2 bits (18), Expect = 0.37
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 241 tctttctctttctctatg 258
||||||||||||||||||
Sbjct: 88 tctttctctttctctatg 71
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,668
Number of Sequences: 29161
Number of extensions: 33668
Number of successful extensions: 1012
Number of sequences better than 10.0: 96
length of query: 679
length of database: 44,058,232
effective HSP length: 17
effective length of query: 662
effective length of database: 43,562,495
effective search space: 28838371690
effective search space used: 28838371690
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)