BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX838316.f
(620 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24996.1 68414.m03115 expressed protein nearly identical... 482 e-135
At1g25170.1 68414.m03125 expressed protein nearly identical... 452 e-126
At1g25097.1 68414.m03119 expressed protein nearly identical... 452 e-126
At1g24822.1 68414.m03109 expressed protein nearly identical... 452 e-126
At5g22070.1 68418.m02570 expressed protein contains Pfam pr... 38 0.086
>At1g24996.1 68414.m03115 expressed protein nearly identical to At1g25170,
At1g25097, At1g24822; similar to ESTs dbj AV530941.1,
dbj|AV530975.1, gb|BE037999.1, gb|BE037993.1,
gb|AI995009.1, gb|AI099531.1, gb|N37906.1, gb|T76894.1
Length = 450
Score = 482 bits (243), Expect = e-135
Identities = 345/370 (93%), Gaps = 8/370 (2%)
Strand = Plus / Minus
Query: 216 agtgtgcaaaagtaagtgccccccccacctctgttcctcacggtttttctgcaaaggcac 275
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 430 agtgtgcaaaagtaagtaccccccc-acctctgttcctcacggtttttctgcaaagg-ac 373
Query: 276 ccaccctccttgtaacttcagcgtccatcacaatgtccccatcatcatcatatttgtaca 335
|||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 372 ccaccctccttg-aacttcagcgtccatcacaatgtccccatcatcatcaaacctgtaca 314
Query: 336 agccagtggcgatcctatcattgttagaagttgattttttatttttgctagtggagggag 395
||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||
Sbjct: 313 agccagtggcgatcctaacattgt-agaagttgatagc--atttttgcaagtggagggag 257
Query: 396 cacttgtgttatctccacgtattgcctgtcttgattaaagcggttgttaactctgtaaag 455
|||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 256 cacttgtgtt-tctccacgtattgc-tgtcttgattaaagcggttgtcaactctgtaaag 199
Query: 456 tctttctacttcaataggtatggtaaatgagtttgattctgggaataggttgtggttgtt 515
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tccctctacttcaataggtatggtaaatgagtttgattctgggaataggttgtggttgtt 139
Query: 516 ataaagaattttccactcagcagcgttgagccagcgcttttttgttgtttgaagcacagc 575
||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 138 ataaagaatgctccactcagcagcgttgagccagcgctgtgttgatgtttgaagcacagc 79
Query: 576 tgctacatct 585
||||||||||
Sbjct: 78 tgctacatct 69
>At1g25170.1 68414.m03125 expressed protein nearly identical to At1g24996,
At1g25097, At1g24822
Length = 651
Score = 452 bits (228), Expect = e-126
Identities = 320/343 (93%), Gaps = 7/343 (2%)
Strand = Plus / Minus
Query: 243 cctctgttcctcacggtttttctgcaaaggcacccaccctccttgtaacttcagcgtcca 302
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 404 cctctgttcctcacggtttttctgcaaagg-acccaccctccttg-aacttcagcgtcca 347
Query: 303 tcacaatgtccccatcatcatcatatttgtacaagccagtggcgatcctatcattgttag 362
||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||
Sbjct: 346 tcacaatgtccccatcatcatcaaacctgtacaagccagtggcgatcctaacattgt-ag 288
Query: 363 aagttgattttttatttttgctagtggagggagcacttgtgttatctccacgtattgcct 422
|||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct: 287 aagttgatagc--atttttgcaagtggagggagcacttgtgtt-tctccacgtattgc-t 232
Query: 423 gtcttgattaaagcggttgttaactctgtaaagtctttctacttcaataggtatggtaaa 482
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 231 gtcttgattaaagcggttgtcaactctgtaaagtccctctacttcaataggtatggtaaa 172
Query: 483 tgagtttgattctgggaataggttgtggttgttataaagaattttccactcagcagcgtt 542
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 171 tgagtttgattctgggaataggttgtggttgttataaagaatgctccactcagcagcgtt 112
Query: 543 gagccagcgcttttttgttgtttgaagcacagctgctacatct 585
||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 111 gagccagcgctgtgttgatgtttgaagcacagctgctacatct 69
>At1g25097.1 68414.m03119 expressed protein nearly identical to At1g24996,
At1g25170, At1g24822; similar to ESTs dbj AV530941.1,
dbj|AV530975.1, gb|BE037999.1, gb|BE037993.1,
gb|AI995009.1, gb|AI099531.1, gb|N37906.1, gb|T76894.1
Length = 651
Score = 452 bits (228), Expect = e-126
Identities = 320/343 (93%), Gaps = 7/343 (2%)
Strand = Plus / Minus
Query: 243 cctctgttcctcacggtttttctgcaaaggcacccaccctccttgtaacttcagcgtcca 302
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 404 cctctgttcctcacggtttttctgcaaagg-acccaccctccttg-aacttcagcgtcca 347
Query: 303 tcacaatgtccccatcatcatcatatttgtacaagccagtggcgatcctatcattgttag 362
||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||
Sbjct: 346 tcacaatgtccccatcatcatcaaacctgtacaagccagtggcgatcctaacattgt-ag 288
Query: 363 aagttgattttttatttttgctagtggagggagcacttgtgttatctccacgtattgcct 422
|||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct: 287 aagttgatagc--atttttgcaagtggagggagcacttgtgtt-tctccacgtattgc-t 232
Query: 423 gtcttgattaaagcggttgttaactctgtaaagtctttctacttcaataggtatggtaaa 482
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 231 gtcttgattaaagcggttgtcaactctgtaaagtccctctacttcaataggtatggtaaa 172
Query: 483 tgagtttgattctgggaataggttgtggttgttataaagaattttccactcagcagcgtt 542
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 171 tgagtttgattctgggaataggttgtggttgttataaagaatgctccactcagcagcgtt 112
Query: 543 gagccagcgcttttttgttgtttgaagcacagctgctacatct 585
||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 111 gagccagcgctgtgttgatgtttgaagcacagctgctacatct 69
>At1g24822.1 68414.m03109 expressed protein nearly identical to At1g24996,
At1g25170, At1g25097; similar to ESTs dbj AV530941.1,
dbj|AV530975.1, gb|BE037999.1, gb|BE037993.1,
gb|AI995009.1, gb|AI099531.1, gb|N37906.1, gb|T76894.1
Length = 651
Score = 452 bits (228), Expect = e-126
Identities = 320/343 (93%), Gaps = 7/343 (2%)
Strand = Plus / Minus
Query: 243 cctctgttcctcacggtttttctgcaaaggcacccaccctccttgtaacttcagcgtcca 302
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 404 cctctgttcctcacggtttttctgcaaagg-acccaccctccttg-aacttcagcgtcca 347
Query: 303 tcacaatgtccccatcatcatcatatttgtacaagccagtggcgatcctatcattgttag 362
||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||
Sbjct: 346 tcacaatgtccccatcatcatcaaacctgtacaagccagtggcgatcctaacattgt-ag 288
Query: 363 aagttgattttttatttttgctagtggagggagcacttgtgttatctccacgtattgcct 422
|||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct: 287 aagttgatagc--atttttgcaagtggagggagcacttgtgtt-tctccacgtattgc-t 232
Query: 423 gtcttgattaaagcggttgttaactctgtaaagtctttctacttcaataggtatggtaaa 482
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 231 gtcttgattaaagcggttgtcaactctgtaaagtccctctacttcaataggtatggtaaa 172
Query: 483 tgagtttgattctgggaataggttgtggttgttataaagaattttccactcagcagcgtt 542
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 171 tgagtttgattctgggaataggttgtggttgttataaagaatgctccactcagcagcgtt 112
Query: 543 gagccagcgcttttttgttgtttgaagcacagctgctacatct 585
||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 111 gagccagcgctgtgttgatgtttgaagcacagctgctacatct 69
>At5g22070.1 68418.m02570 expressed protein contains Pfam profile PF03267:
Arabidopsis protein of unknown function, DUF266
Length = 1883
Score = 38.2 bits (19), Expect = 0.086
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 tcaatctctctttctcatctctc 24
|||| ||||||||||||||||||
Sbjct: 524 tcaacctctctttctcatctctc 546
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,287
Number of Sequences: 29161
Number of extensions: 24287
Number of successful extensions: 1985
Number of sequences better than 10.0: 49
length of query: 620
length of database: 44,058,232
effective HSP length: 17
effective length of query: 603
effective length of database: 43,562,495
effective search space: 26268184485
effective search space used: 26268184485
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)