BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.2.cl.212.Contig1
(1552 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE73829.1| Hypothetical protein CBG21394 [Caenorhabdit... 43 0.017
gb|AAF87004.1| F26F24.30 [Arabidopsis thaliana] 42 0.050
pir||D86384 unknown protein [imported] - Arabidopsis thalia... 40 0.11
ref|NP_965289.1| translation initiation factor IF-2 [Lactob... 40 0.14
ref|NP_766180.1| expressed sequence AI450757 [Mus musculus]... 39 0.42
ref|NP_702646.1| hypothetical protein [Plasmodium falciparu... 38 0.55
emb|CAE61155.1| Hypothetical protein CBG04921 [Caenorhabdit... 38 0.72
emb|CAE61154.1| Hypothetical protein CBG04920 [Caenorhabdit... 38 0.72
emb|CAE71741.1| Hypothetical protein CBG18725 [Caenorhabdit... 37 0.94
dbj|BAC29709.1| unnamed protein product [Mus musculus] 37 0.94
>emb|CAE73829.1| Hypothetical protein CBG21394 [Caenorhabditis briggsae]
Length = 1108
Score = 43.1 bits (100), Expect = 0.017
Identities = 53/221 (23%), Positives = 97/221 (42%), Gaps = 7/221 (3%)
Frame = -3
Query: 1067 ENPRHRIATLPIPNEDYLTNKENQSIHTSKNGR--RLEIPHNFWKRRNRSKQNQDWFTPS 894
+NPR + + P P + +N I SKN R + + P N + +++ + Q+ S
Sbjct: 443 KNPRIQESKNPPPKNPRIQESKNPRIQKSKNPRIQKSKNPKNPRIQESKNPRIQE----S 498
Query: 893 KTP-MQKRDLDQV*TVETRTEPIQFATNRRL-ETARERIGSRNKQTRQDIE*ARVQDTR- 723
K P +Q+ ++ E++ IQ + N R+ E+ RI Q+ + R+Q ++
Sbjct: 499 KNPRIQESKNPRI--QESKNPRIQESKNPRIQESKNPRIQESKNPRIQESKNPRIQKSKN 556
Query: 722 PQKTENKVDSINATNKPTMKTKG*EPKREMKRTRLTKAQNPIMRQLTLKYRCTVATLSQR 543
P+ E+K I + P ++ +E K R+ +++NP +++ +
Sbjct: 557 PRIQESKNPKIQESKNPRIQESKNPRIQESKNPRIQESKNPRIQKSQESKNPRIQESKNP 616
Query: 542 RSQTTNN--ISRRHNFRLQPSSETRSARTKEKPIIFSKQRK 426
R Q + N I N R+Q S R +K I SK K
Sbjct: 617 RIQKSKNPRIQESKNPRIQESKNPRIQESKNPRIQESKNPK 657
>gb|AAF87004.1| F26F24.30 [Arabidopsis thaliana]
Length = 133
Score = 41.6 bits (96), Expect = 0.050
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +3
Query: 765 LLVSRSDSFSCRLQSSVCCELYGLGPCLYGLDLIEVSLLHWCLT 896
LL S S S R SV EL PCLY DLIE+S +HW ++
Sbjct: 81 LLSFLSGSISSRFSFSVWSELIWFSPCLYSKDLIEISSVHWLVS 124
>pir||D86384 unknown protein [imported] - Arabidopsis
thaliana|gi|12321503|gb|AAG50806.1| unknown protein
[Arabidopsis thaliana]
Length = 1213
Score = 40.4 bits (93), Expect = 0.11
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +1
Query: 1441 IDREVRNTISSRRLGFHWQRRMLLWI 1518
+DRE+RN ISSRRL W++ MLLWI
Sbjct: 1187 VDREIRNIISSRRLRKRWRKLMLLWI 1212
>ref|NP_965289.1| translation initiation factor IF-2 [Lactobacillus johnsonii NCC
533]|gi|41583647|gb|AAS09255.1| translation initiation
factor IF-2 [Lactobacillus johnsonii NCC 533]
Length = 880
Score = 40.0 bits (92), Expect = 0.14
Identities = 52/219 (23%), Positives = 90/219 (40%), Gaps = 29/219 (13%)
Frame = -3
Query: 1016 LTNKENQSIHTSKNGRRLEIPHNFWKRRNRSKQNQDWFTPSKTPMQKRDLDQV*TVETRT 837
+ ++N++ H +++G +NF K++N ++N+D T S P RDL + R
Sbjct: 81 IRRRDNKNEHDNRHGNNKHRNNNFKKQQNNRRENEDKKTTSAKP-AARDLLNKFKKKQRA 139
Query: 836 EPIQFATNRRLETARERIGSRNKQTRQDIE*ARVQDTRPQKTENKVDS-------INATN 678
E + N + E +R + R ++ +V++TR K E K++ + A+
Sbjct: 140 EASEL--NAQTEASRRKWHQEQNPQRSKVK--KVENTRKPK-EEKLEGAAAVKARVQASQ 194
Query: 677 KPT-MKTKG*EPKREMKRTRLTKAQNPI----------------MRQLTLKYRCTVATLS 549
KP K P R + K PI + T K R V
Sbjct: 195 KPVGPKIIKPSPARNKAKRPTVKKVEPIAPVVPAPQKEETKPTRKKDFTRKKR-EVPDYE 253
Query: 548 QRRSQTTNNISRRH---NFRLQPSSETRSART--KEKPI 447
+ RS+ ++ RR N R+ S E + T KE+P+
Sbjct: 254 RERSEHSDKARRRRNKKNKRINQSKEVKKQPTQRKERPL 292
>ref|NP_766180.1| expressed sequence AI450757 [Mus
musculus]|gi|37537951|sp|Q8BZX4|SFRC_MOUSE Splicing
factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86)
(SRrp86)|gi|26329009|dbj|BAC28243.1| unnamed protein
product [Mus musculus]|gi|47682645|gb|AAH70460.1|
Expressed sequence AI450757 [Mus musculus]
Length = 494
Score = 38.5 bits (88), Expect = 0.42
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 9/221 (4%)
Frame = -3
Query: 1013 TNKENQSIHTSKNGRRLEIPHNFWKRRNRSKQNQDWFTPSKTPMQKRDLDQV*TVETRTE 834
T +++S S + R+ + + NRS+ Q SK+P +KR + E R
Sbjct: 199 TRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR----ERRKS 254
Query: 833 PIQFATNRRLETARERIGSRNKQTRQDIE*ARVQDTRPQK---------TENKVDSINAT 681
+ + + + RE++ R K+ ++ E R +D K E + D
Sbjct: 255 RSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDKERGKNKDKDREKEKDHEKER 314
Query: 680 NKPTMKTKG*EPKREMKRTRLTKAQNPIMRQLTLKYRCTVATLSQRRSQTTNNISRRHNF 501
+K K + + +RE R++ T + ++ R A+ RRS++T+ RR
Sbjct: 315 DKEKEKEQDKDKEREKDRSKETDEKRKKEKKSRTPPRSYNAS---RRSRSTSRERRRRRS 371
Query: 500 RLQPSSETRSARTKEKPIIFSKQRKGSSDRTKPSTNQSPQR 378
R S +RS RT + S + R K + +R
Sbjct: 372 R----SSSRSPRTSKTVKRKSSRSPSPRGRNKKEKKREKER 408
>ref|NP_702646.1| hypothetical protein [Plasmodium falciparum
3D7]|gi|23497833|gb|AAN37370.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1263
Score = 38.1 bits (87), Expect = 0.55
Identities = 39/187 (20%), Positives = 76/187 (39%)
Frame = -3
Query: 941 KRRNRSKQNQDWFTPSKTPMQKRDLDQV*TVETRTEPIQFATNRRLETARERIGSRNKQT 762
K +N K+N+D K+ MQ + + ++ TN+ + ++G+ KQ
Sbjct: 501 KIKNEKKKNEDDNQNKKSNMQDNN-----------KGLKVTTNKT--NLKNKLGNNTKQI 547
Query: 761 RQDIE*ARVQDTRPQKTENKVDSINATNKPTMKTKG*EPKREMKRTRLTKAQNPIMRQLT 582
+Q +++ K +N DS N T KT + K E ++ K NP M +
Sbjct: 548 KQGAN-PFIENDVSDKKDNLQDSNKGLNVTTNKTND-KTKLEDNTKQIKKGTNPFMDEDE 605
Query: 581 LKYRCTVATLSQRRSQTTNNISRRHNFRLQPSSETRSARTKEKPIIFSKQRKGSSDRTKP 402
L+ + + +++ N N + PSS+ ++ S+ ++ S D+T
Sbjct: 606 LEELLRLEREEKIKNEKKKNEDDNQNKKSNPSSQNKTN---------SQNKQNSQDKTNK 656
Query: 401 STNQSPQ 381
+ Q
Sbjct: 657 QSKLDTQ 663
>emb|CAE61155.1| Hypothetical protein CBG04921 [Caenorhabditis briggsae]
Length = 353
Score = 37.7 bits (86), Expect = 0.72
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Frame = -3
Query: 839 TEPIQFATNRRLE---------TARERIGSRNKQTRQDIE*ARVQDTRPQKTENKVDSIN 687
++ + FA +R E T + + +R + R D + T T +K + I
Sbjct: 165 SDRVSFAPKQRNERNNRAFTFSTRQTTMAARLNRNRNDRRSSSTASTMRTTTSSKPEMII 224
Query: 686 ATNKPTMKTKG*EP----KREMKRTRLTKAQNPIMRQLTLKYRCTVATLSQRRSQTTNNI 519
TN+P T + ++ K+T+ KA +P T T T+ RR TT++
Sbjct: 225 KTNRPISSTTPRQTTTKTRKPRKKTQSRKA-DPTTTITTTATMRTTTTMRTRR--TTSHQ 281
Query: 518 SRRHNFRLQPSSETRSARTKEKPIIFSKQRKGSSDRTKPST 396
SRR + T + T++ I K R R +P+T
Sbjct: 282 SRRTTTEPRTKRTTSAPETRQTTITTQKTRNDRRRRGRPTT 322
>emb|CAE61154.1| Hypothetical protein CBG04920 [Caenorhabditis briggsae]
Length = 574
Score = 37.7 bits (86), Expect = 0.72
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Frame = -3
Query: 839 TEPIQFATNRRLE---------TARERIGSRNKQTRQDIE*ARVQDTRPQKTENKVDSIN 687
++ + FA +R E T + + +R + R D + T T +K + I
Sbjct: 386 SDRVSFAPKQRNERNNRAFTFSTRQTTMAARLNRNRNDRRSSSTASTMRTTTSSKPEMII 445
Query: 686 ATNKPTMKTKG*EP----KREMKRTRLTKAQNPIMRQLTLKYRCTVATLSQRRSQTTNNI 519
TN+P T + ++ K+T+ KA +P T T T+ RR TT++
Sbjct: 446 KTNRPISSTTPRQTTTKTRKPRKKTQSRKA-DPTTTITTTATMRTTTTMRTRR--TTSHQ 502
Query: 518 SRRHNFRLQPSSETRSARTKEKPIIFSKQRKGSSDRTKPST 396
SRR + T + T++ I K R R +P+T
Sbjct: 503 SRRTTTEPRTKRTTSAPETRQTTITTQKTRNDRRRRGRPTT 543
>emb|CAE71741.1| Hypothetical protein CBG18725 [Caenorhabditis briggsae]
Length = 508
Score = 37.4 bits (85), Expect = 0.94
Identities = 48/195 (24%), Positives = 80/195 (40%), Gaps = 16/195 (8%)
Frame = -3
Query: 932 NRSKQNQDWFTPSKTPMQKRDLDQV*TVETRTEPIQFATNRRLETARERIGSRNKQTRQD 753
+R K+ QD + +++D +Q E E Q ++ E +I + KQT Q
Sbjct: 289 DRQKEEQDEEQDEEQD-KEQDEEQEKNQEDEYEDEQEEEDQLTEAPTTKIFRKRKQTNQM 347
Query: 752 IE*ARVQDTRPQK------------TENKVDSINATNKPTMKTKG*EP----KREMKRTR 621
AR+ R ++ T +K + I TN+P T + ++ K+T+
Sbjct: 348 A--ARLNRNRNERRSSSTASTMRTTTSSKPEMIIKTNRPISSTTPRQTTTKTRKPRKKTQ 405
Query: 620 LTKAQNPIMRQLTLKYRCTVATLSQRRSQTTNNISRRHNFRLQPSSETRSARTKEKPIIF 441
KA +P T T T+ RR TT++ SRR + T + T++ I
Sbjct: 406 SRKA-DPTTTITTTATMRTTTTMRTRR--TTSHQSRRTTTEPRTKRTTSAPETRQTTITT 462
Query: 440 SKQRKGSSDRTKPST 396
K R R +P+T
Sbjct: 463 QKTRNDRRRRGRPTT 477
>dbj|BAC29709.1| unnamed protein product [Mus musculus]
Length = 400
Score = 37.4 bits (85), Expect = 0.94
Identities = 45/195 (23%), Positives = 82/195 (41%), Gaps = 9/195 (4%)
Frame = -3
Query: 1013 TNKENQSIHTSKNGRRLEIPHNFWKRRNRSKQNQDWFTPSKTPMQKRDLDQV*TVETRTE 834
T +++S S + R+ + + NRS+ Q SK+P +KR + E R
Sbjct: 199 TRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR----ERRKS 254
Query: 833 PIQFATNRRLETARERIGSRNKQTRQDIE*ARVQDTRPQK---------TENKVDSINAT 681
+ + + + RE++ R K+ ++ E R +D K E + D
Sbjct: 255 RSRSRSRDKRKDTREKVKERVKEKEREKEREREKDREKDKERGKNKDKDREKEKDHEKER 314
Query: 680 NKPTMKTKG*EPKREMKRTRLTKAQNPIMRQLTLKYRCTVATLSQRRSQTTNNISRRHNF 501
+K K + + +RE R++ T + ++ R A+ RRS++T+ RR
Sbjct: 315 DKEKEKEQDKDKEREKDRSKETDEKRKKEKKSRTPPRSYNAS---RRSRSTSRERRRRRS 371
Query: 500 RLQPSSETRSARTKE 456
R S +RS RT +
Sbjct: 372 R----SSSRSPRTSK 382
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 130
effective length of database: 383,324,178
effective search space used: 147963132708
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)