BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU228827_RAFL16_53_E15.r
(425 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80320.1 68414.m09403 oxidoreductase, 2OG-Fe(II) oxygena... 490 e-138
At4g04480.1 68417.m00650 hypothetical protein 36 0.23
At3g01750.1 68416.m00112 ankyrin repeat family protein cont... 36 0.23
At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomeras... 34 0.91
At5g22660.1 68418.m02648 F-box family protein contains F-bo... 34 0.91
>At1g80320.1 68414.m09403 oxidoreductase, 2OG-Fe(II) oxygenase family protein
similar to GS-AOP loci [GI:16118889, GI:16118887,
GI:16118891, GI:16118893]; contains PF03171 2OG-Fe(II)
oxygenase superfamily domain
Length = 963
Score = 490 bits (247), Expect = e-138
Identities = 257/259 (99%), Gaps = 1/259 (0%)
Strand = Plus / Minus
Query: 168 ttagggtgtgacgccgcagtagatctggagaagatcttcgctggatttcttgagagaatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ttagggtgtgacgccgcagtagatctggagaagatcttcgctggatttcttgagagaatt 904
Query: 228 gatgtacgactcgtagaagcgtaagaggccgtcgtgctcgaaaggattgtagcggagggg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gatgtacgactcgtagaagcgtaagaggccgtcgtgctcgaaaggattgtagcggagggg 844
Query: 288 atgttggtcatcgacgagctcctccggggtacggatcgttcctttgtggaaggagaaaaa 347
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 843 atgttggtcatcgacgagctcctccggcgtacggatcgttcctttgtggaaggagaaaaa 784
Query: 348 ccctaaagagtatcgaatctcatctgcactcatcactacc-tgtggtaacatgcctttat 406
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 783 ccctaaagagtatcgaatctcatctgcactcatcactaccttgtggtaacatgcctttat 724
Query: 407 cctatcgttactccacgcc 425
|||||||||||||||||||
Sbjct: 723 cctatcgttactccacgcc 705
>At4g04480.1 68417.m00650 hypothetical protein
Length = 1197
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 337 aaggagaaaaaccctaaa 354
||||||||||||||||||
Sbjct: 691 aaggagaaaaaccctaaa 708
>At3g01750.1 68416.m00112 ankyrin repeat family protein contains ankyrin
repeats, Pfam:PF00023
Length = 2556
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 70 aaaactgaaaaagagttg 87
||||||||||||||||||
Sbjct: 370 aaaactgaaaaagagttg 353
>At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase, putative /
FK506-binding protein, putative similar to rof1
[Arabidopsis thaliana] GI:1373396
Length = 2130
Score = 34.2 bits (17), Expect = 0.91
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 331 ttgtggaaggagaaaaa 347
|||||||||||||||||
Sbjct: 695 ttgtggaaggagaaaaa 711
>At5g22660.1 68418.m02648 F-box family protein contains F-box domain
Pfam:PF00646
Length = 1611
Score = 34.2 bits (17), Expect = 0.91
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 186 gtagatctggagaagat 202
|||||||||||||||||
Sbjct: 160 gtagatctggagaagat 176
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,571
Number of Sequences: 29161
Number of extensions: 13571
Number of successful extensions: 1147
Number of sequences better than 10.0: 33
length of query: 425
length of database: 44,058,232
effective HSP length: 17
effective length of query: 408
effective length of database: 43,562,495
effective search space: 17773497960
effective search space used: 17773497960
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)