BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.18.cl.1867.Contig1
(637 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16630.2 68416.m02126 kinesin motor family protein simil... 1243 0.0
At3g16630.1 68416.m02125 kinesin motor family protein simil... 1243 0.0
At5g03580.1 68418.m00316 polyadenylate-binding protein, put... 36 0.35
At5g04870.1 68418.m00510 calcium-dependent protein kinase i... 34 1.4
At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-con... 34 1.4
>At3g16630.2 68416.m02126 kinesin motor family protein similar to mitotic
centromere-associated kinesin GB:AAC27660 from [Homo
sapiens]; contains Pfam profile PF00225: Kinesin motor
domain
Length = 3019
Score = 1243 bits (627), Expect = 0.0
Identities = 627/627 (100%)
Strand = Plus / Minus
Query: 1 atatccgacgaactgacatctcttttagaccaattttgtggtctgtctggtttttcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 atatccgacgaactgacatctcttttagaccaattttgtggtctgtctggtttttcttcc 2314
Query: 61 cgcaaccctttcccacgaggtggtgacactttctttactttctcttcacggtctgaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 cgcaaccctttcccacgaggtggtgacactttctttactttctcttcacggtctgaagtt 2254
Query: 121 tcttggggatatgaagaaatgttgtttctctgactagtggagccagcaaaagaactgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 tcttggggatatgaagaaatgttgtttctctgactagtggagccagcaaaagaactgttc 2194
Query: 181 ggctctgatcttcccttgtccattgagaatgatgggattccactttcctctcgataattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2193 ggctctgatcttcccttgtccattgagaatgatgggattccactttcctctcgataattt 2134
Query: 241 gtaggctgtctgaagtcaatacccgacgtactgctgttgctgtccttctcgaccaccctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2133 gtaggctgtctgaagtcaatacccgacgtactgctgttgctgtccttctcgaccaccctc 2074
Query: 301 ctcctggtttctggtacattcacttcctgtggaggctcaaagacatcttctacatcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2073 ctcctggtttctggtacattcacttcctgtggaggctcaaagacatcttctacatcattt 2014
Query: 361 gggcccaacaaaggatccttattaaccggaggcattgaattcgcagtttgatctttcttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013 gggcccaacaaaggatccttattaaccggaggcattgaattcgcagtttgatctttcttg 1954
Query: 421 ctatttccacttttagatagacttttgactcgatcagcatatcttagagtattgagggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1953 ctatttccacttttagatagacttttgactcgatcagcatatcttagagtattgagggta 1894
Query: 481 tgttcacacgatcctgcatttggagagatgcaggaaatcatcaccgttcttgagtttcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1893 tgttcacacgatcctgcatttggagagatgcaggaaatcatcaccgttcttgagtttcca 1834
Query: 541 acaaatgagtcacggagcacttccgttagtttgcttccacgaaatggtatatgtagctgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1833 acaaatgagtcacggagcacttccgttagtttgcttccacgaaatggtatatgtagctgg 1774
Query: 601 tcattgtccagtgcacgtatacattcc 627
|||||||||||||||||||||||||||
Sbjct: 1773 tcattgtccagtgcacgtatacattcc 1747
>At3g16630.1 68416.m02125 kinesin motor family protein similar to mitotic
centromere-associated kinesin GB:AAC27660 from [Homo
sapiens]; contains Pfam profile PF00225: Kinesin motor
domain
Length = 3033
Score = 1243 bits (627), Expect = 0.0
Identities = 627/627 (100%)
Strand = Plus / Minus
Query: 1 atatccgacgaactgacatctcttttagaccaattttgtggtctgtctggtttttcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2387 atatccgacgaactgacatctcttttagaccaattttgtggtctgtctggtttttcttcc 2328
Query: 61 cgcaaccctttcccacgaggtggtgacactttctttactttctcttcacggtctgaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2327 cgcaaccctttcccacgaggtggtgacactttctttactttctcttcacggtctgaagtt 2268
Query: 121 tcttggggatatgaagaaatgttgtttctctgactagtggagccagcaaaagaactgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2267 tcttggggatatgaagaaatgttgtttctctgactagtggagccagcaaaagaactgttc 2208
Query: 181 ggctctgatcttcccttgtccattgagaatgatgggattccactttcctctcgataattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2207 ggctctgatcttcccttgtccattgagaatgatgggattccactttcctctcgataattt 2148
Query: 241 gtaggctgtctgaagtcaatacccgacgtactgctgttgctgtccttctcgaccaccctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2147 gtaggctgtctgaagtcaatacccgacgtactgctgttgctgtccttctcgaccaccctc 2088
Query: 301 ctcctggtttctggtacattcacttcctgtggaggctcaaagacatcttctacatcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2087 ctcctggtttctggtacattcacttcctgtggaggctcaaagacatcttctacatcattt 2028
Query: 361 gggcccaacaaaggatccttattaaccggaggcattgaattcgcagtttgatctttcttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2027 gggcccaacaaaggatccttattaaccggaggcattgaattcgcagtttgatctttcttg 1968
Query: 421 ctatttccacttttagatagacttttgactcgatcagcatatcttagagtattgagggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1967 ctatttccacttttagatagacttttgactcgatcagcatatcttagagtattgagggta 1908
Query: 481 tgttcacacgatcctgcatttggagagatgcaggaaatcatcaccgttcttgagtttcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1907 tgttcacacgatcctgcatttggagagatgcaggaaatcatcaccgttcttgagtttcca 1848
Query: 541 acaaatgagtcacggagcacttccgttagtttgcttccacgaaatggtatatgtagctgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1847 acaaatgagtcacggagcacttccgttagtttgcttccacgaaatggtatatgtagctgg 1788
Query: 601 tcattgtccagtgcacgtatacattcc 627
|||||||||||||||||||||||||||
Sbjct: 1787 tcattgtccagtgcacgtatacattcc 1761
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative / PABP,
putative similar to poly(A)-binding protein [Triticum
aestivum] GI:1737492; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 306
Score = 36.2 bits (18), Expect = 0.35
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 132 tgaagaaatgttgtttct 149
||||||||||||||||||
Sbjct: 87 tgaagaaatgttgtttct 104
>At5g04870.1 68418.m00510 calcium-dependent protein kinase isoform AK1 (AK1)
identical to calcium-dependent protein kinase, isoform
AK1 (CDPK) [Arabidopsis thaliana] SWISS-PROT:Q06850;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 2526
Score = 34.2 bits (17), Expect = 1.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 407 tttgatctttcttgctatttc 427
|||||| ||||||||||||||
Sbjct: 207 tttgatttttcttgctatttc 227
>At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containing protein
contains INTERPRO:IPR002885 PPR repeats
Length = 2469
Score = 34.2 bits (17), Expect = 1.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 133 gaagaaatgttgtttct 149
|||||||||||||||||
Sbjct: 696 gaagaaatgttgtttct 712
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,939
Number of Sequences: 29161
Number of extensions: 18939
Number of successful extensions: 1490
Number of sequences better than 10.0: 31
length of query: 637
length of database: 44,058,232
effective HSP length: 17
effective length of query: 620
effective length of database: 43,562,495
effective search space: 27008746900
effective search space used: 27008746900
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)