BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.17.cl.1775.Contig1
         (1343 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60360.1  68418.m07568 cysteine proteinase, putative / AA...  2646   0.0  
At3g45310.1  68416.m04892 cysteine proteinase, putative simi...   591   e-168
At5g60540.1  68418.m07591 SNO glutamine amidotransferase fam...    38   0.19 
At1g75210.1  68414.m08737 5' nucleotidase family protein con...    38   0.19 
At1g66550.1  68414.m07561 WRKY family transcription factor s...    38   0.19 
>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP protein (AALP)
            identical to AALP protein GI:7230640 from [Arabidopsis
            thaliana]; similar to barley aleurain
          Length = 1468

 Score = 2646 bits (1335), Expect = 0.0
 Identities = 1341/1343 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    taaatcaatttatgttcataaatttaacatgaaaatattataaatttgtcgtctatagtt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 taaatcaatttatgttcataaatttaacatgaaaatattataaatttgtcgtctatagtt 1382

                                                                        
Query: 61   ttggctttattttgtacatattaacagacctttttatgttacaacaagcataaaccatat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ttggctttattttgtacatattaacagacctttttatgttacaacaagcataaaccatat 1322

                                                                        
Query: 121  gcattcccaagtcccaacttttacgtaatgtcttaatccaataaatacgtgaacatttcg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 gcattcccaagtcccaacttttacgtaatgtcttaatccaataaatacgtgaacatttcg 1262

                                                                        
Query: 181  taatttgataattgaccaaccacattcgctgatcatctcaagccacaacggggtatgatg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 taatttgataattgaccaaccacattcgctgatcatctcaagccacaacggggtatgatg 1202

                                                                        
Query: 241  cacatgtagcaataccacacatgttcttccccatctccatcttgaagtaacctttgtcgc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 cacatgtagcaataccacacatgttcttccccatctccatcttgaagtaacctttgtcgc 1142

                                                                        
Query: 301  cccaatccgctccccatgagttcttaataagccaatatggtacaccgtcttcaactccat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 cccaatccgctccccatgagttcttaataagccaatatggtacaccgtcttcaactccat 1082

                                                                        
Query: 361  aaccaacggccaaaaccgcgtggttcacatccattggagtacttccacagtgactatcag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaccaacggccaaaaccgcgtggttcacatccattggagtacttccacagtgactatcag 1022

                                                                        
Query: 421  tgtaaactccactcttgtaaagccggaacgagtgtataacctcaaatgctatgcttactg 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tgtaaactccactcttgtaaagccggaacgagtgtataacctcaaatgctatgcttactg 962

                                                                        
Query: 481  gccgtaccaatccaaccgcatgcttcagttcatcttcagcacccagagtaatgttgactg 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  gccgtaccaatccaaccgcatgcttcagttcatcttcagcacccagagtaatgttgactg 902

                                                                        
Query: 541  agttgaggacttgtacaccaacgttttcagctgaaaatttgcaggtttcatctttaccgg 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  agttgaggacttgtacaccaacgttttcagctgaaaatttgcaggtttcatctttaccgg 842

                                                                        
Query: 601  tataaggataagctttctctgtgtcgaggccaccgttggattttatgtattcaaaggctt 660
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 841  tataaggataagctttctctgtgtcgaggccaccgttggatttgatgtattcaaaggctt 782

                                                                        
Query: 661  gagaaggaaggccaccattgcaaccatagttattgaaagctccagcacaatccacaagct 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  gagaaggaaggccaccattgcaaccatagttattgaaagctccagcacaatccacaagct 722

                                                                        
Query: 721  gttgctcagagagagatattccttttccaaatgcctgatggtaagctgcctcaagagctc 780
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  gttgctcagagagagaaattccttttccaaatgcctgatggtaagctgcctcaagagctc 662

                                                                        
Query: 781  cagttgtgctgaatgtccagcaagatccacaacctccctgatctttgaccggactaacga 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  cagttgtgctgaatgtccagcaagatccacaacctccctgatctttgaccggactaacga 602

                                                                        
Query: 841  taccatcttctctccagtcttttgtttcaggaagagctgcttctgtgaccttgtggctgc 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  taccatcttctctccagtcttttgtttcaggaagagctgcttctgtgaccttgtggctgc 542

                                                                        
Query: 901  cctttaaagtggcagagcagttctgagcagcaccaagcttggtcctttgaaactcttgcc 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  cctttaaagtggcagagcagttctgagcagcaccaagcttggtcctttgaaactcttgcc 482

                                                                        
Query: 961  atgtcaaatcagcaaattgattaacaccgagtttgtaagataagcctttcttgttggtgg 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  atgtcaaatcagcaaattgattaacaccgagtttgtaagataagcctttcttgttggtgg 422

                                                                        
Query: 1021 atctgatcaaatcaagattctccttgaaaatcgagaatcgaagcttcatctcctccacgt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atctgatcaaatcaagattctccttgaaaatcgagaatcgaagcttcatctcctccacgt 362

                                                                        
Query: 1081 tctgatactttttaccatatcggtgagtgaagcgagcgaaagagagaacgtgacgagatt 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tctgatactttttaccatatcggtgagtgaagcgagcgaaagagagaacgtgacgagatt 302

                                                                        
Query: 1141 gacctaagatctgggaaacagattcttctacctcccggagaccatcggagaccattcgga 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gacctaagatctgggaaacagattcttctacctcccggagaccatcggagaccattcgga 242

                                                                        
Query: 1201 tcgggtttgactcatcgaatccgatattagccgctgctgatgcggcgacgagaaccacca 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tcgggtttgactcatcgaatccgatattagccgctgctgatgcggcgacgagaaccacca 182

                                                                        
Query: 1261 aaactactgatgataggattgttttcgcagacatggctttctctctctcgttcttacttt 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aaactactgatgataggattgttttcgcagacatggctttctctctctcgttcttacttt 122

                                   
Query: 1321 tttttttttctcaacgctaatgt 1343
            |||||||||||||||||||||||
Sbjct: 121  tttttttttctcaacgctaatgt 99
>At3g45310.1 68416.m04892 cysteine proteinase, putative similar to AALP protein
            GI:7230640 from [Arabidopsis thaliana] and barley
            aleurain
          Length = 1418

 Score =  591 bits (298), Expect = e-168
 Identities = 583/678 (85%)
 Strand = Plus / Minus

                                                                        
Query: 477  actggccgtaccaatccaaccgcatgcttcagttcatcttcagcacccagagtaatgttg 536
            ||||||| |||||| || ||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 839  actggccttaccaacccgaccgcgtgcttcagttcatcttctgcacccagggtaatgttg 780

                                                                        
Query: 537  actgagttgaggacttgtacaccaacgttttcagctgaaaatttgcaggtttcatcttta 596
            || ||||   ||||||||||||| | |||||  |||||||||||||||    | ||||| 
Sbjct: 779  acagagtcacggacttgtacaccgatgtttttcgctgaaaatttgcagccaccgtctttt 720

                                                                        
Query: 597  ccggtataaggataagctttctctgtgtcgaggccaccgttggattttatgtattcaaag 656
            ||||| ||||||||||| | ||| |||||||| ||||||||| |||| ||||||||||||
Sbjct: 719  ccggtgtaaggataagcctcctccgtgtcgagcccaccgttgtatttaatgtattcaaag 660

                                                                        
Query: 657  gcttgagaaggaaggccaccattgcaaccatagttattgaaagctccagcacaatccaca 716
            |||||||||||||| |||||||  |||||| ||||||||||||  |||||||||||||||
Sbjct: 659  gcttgagaaggaagtccaccatgacaaccaaagttattgaaagtaccagcacaatccaca 600

                                                                        
Query: 717  agctgttgctcagagagagatattccttttccaaatgcctgatggtaagctgcctcaaga 776
            ||||||||||| || | ||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 599  agctgttgctcggacaaagatattccttttccaaatgcttgatggtaagctgcttcaaga 540

                                                                        
Query: 777  gctccagttgtgctgaatgtccagcaagatccacaacctccctgatctttgaccggacta 836
            |||||||||||||| |||||||| ||||||||||||  |||||| ||||| || || |||
Sbjct: 539  gctccagttgtgctaaatgtccaacaagatccacaatgtccctgttctttcacagggcta 480

                                                                        
Query: 837  acgataccatcttctctccagtcttttgtttcaggaagagctgcttctgtgaccttgtgg 896
            || ||||||||||||||||| |||||||| || ||||  |  ||||| |||| |||||||
Sbjct: 479  acaataccatcttctctccaatcttttgtgtctggaactgtagcttcagtgatcttgtgg 420

                                                                        
Query: 897  ctgccctttaaagtggcagagcagttctgagcagcaccaagcttggtcctttgaaactct 956
            || ||||||||||| ||||| ||||| |||||||| |||||||||   ||||||||||||
Sbjct: 419  ctaccctttaaagtagcagaacagttttgagcagctccaagcttgtatctttgaaactct 360

                                                                        
Query: 957  tgccatgtcaaatcagcaaattgattaacaccgagtttgtaagataagcctttcttgttg 1016
            ||||||||||| |||||||| ||||||| |  |||||| || |||||||||||||| || 
Sbjct: 359  tgccatgtcaagtcagcaaactgattaagagagagtttataggataagcctttcttatta 300

                                                                        
Query: 1017 gtggatctgatcaaatcaagattctccttgaaaatcgagaatcgaagcttcatctcctcc 1076
            ||||||||||| ||||||||||||||||| ||||  |||||||  | |||||||||||||
Sbjct: 299  gtggatctgattaaatcaagattctccttaaaaacagagaatcttaacttcatctcctcc 240

                                                                        
Query: 1077 acgttctgatactttttaccatatcggtgagtgaagcgagcgaaagagagaacgtgacga 1136
            ||  |||||||||| || ||||| | ||||||||||||||  || || ||||| ||||| 
Sbjct: 239  acactctgatacttcttcccatacctgtgagtgaagcgagaaaaggatagaacatgacgg 180

                              
Query: 1137 gattgacctaagatctgg 1154
            || || |||| |||||||
Sbjct: 179  gactgtcctaggatctgg 162

 Score =  143 bits (72), Expect = 4e-33
 Identities = 141/164 (85%)
 Strand = Plus / Minus

                                                                        
Query: 237  gatgcacatgtagcaataccacacatgttcttccccatctccatcttgaagtaacctttg 296
            |||| |||||| |||| ||||||||||||||| ||||| |||||||||||||| || |||
Sbjct: 1079 gatgaacatgttgcaacaccacacatgttctttcccatttccatcttgaagtagccattg 1020

                                                                        
Query: 297  tcgccccaatccgctccccatgagttcttaataagccaatatggtacaccgtcttcaact 356
            || ||||| ||  |||||||||||||||| |||||||| || || ||  |||||||||||
Sbjct: 1019 tctccccattcacctccccatgagttctttataagccagtacgggacgtcgtcttcaact 960

                                                        
Query: 357  ccataaccaacggccaaaaccgcgtggttcacatccattggagt 400
            ||||||||||| || || || || ||||| ||||||||||||||
Sbjct: 959  ccataaccaactgctaacactgcatggtttacatccattggagt 916
>At5g60540.1 68418.m07591 SNO glutamine amidotransferase family protein similar
           to pyridoxine synthesis protein PDX2 [Cercospora
           nicotianae] GI:9954418; contains Pfam profile PF01174:
           SNO glutamine amidotransferase family
          Length = 1174

 Score = 38.2 bits (19), Expect = 0.19
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 859 cttttgtttcaggaagagc 877
           |||||||||||||||||||
Sbjct: 714 cttttgtttcaggaagagc 696
>At1g75210.1 68414.m08737 5' nucleotidase family protein contains Pfam profile:
            PF05761 5' nucleotidase family
          Length = 2274

 Score = 38.2 bits (19), Expect = 0.19
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1314 ttacttttttttttttctc 1332
            |||||||||||||||||||
Sbjct: 76   ttacttttttttttttctc 58
>At1g66550.1 68414.m07561 WRKY family transcription factor similar to DNA-binding
            protein 3 [Nicotiana tabacum] GI:7406995
          Length = 765

 Score = 38.2 bits (19), Expect = 0.19
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1032 tcaagattctccttgaaaa 1050
            |||||||||||||||||||
Sbjct: 68   tcaagattctccttgaaaa 86
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,400
Number of Sequences: 29161
Number of extensions: 52400
Number of successful extensions: 1321
Number of sequences better than 10.0: 45
length of query: 1343
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1325
effective length of database: 43,533,334
effective search space: 57681667550
effective search space used: 57681667550
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)