BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.17.cl.1775.Contig1
(1343 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60360.1 68418.m07568 cysteine proteinase, putative / AA... 2646 0.0
At3g45310.1 68416.m04892 cysteine proteinase, putative simi... 591 e-168
At5g60540.1 68418.m07591 SNO glutamine amidotransferase fam... 38 0.19
At1g75210.1 68414.m08737 5' nucleotidase family protein con... 38 0.19
At1g66550.1 68414.m07561 WRKY family transcription factor s... 38 0.19
>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP protein (AALP)
identical to AALP protein GI:7230640 from [Arabidopsis
thaliana]; similar to barley aleurain
Length = 1468
Score = 2646 bits (1335), Expect = 0.0
Identities = 1341/1343 (99%)
Strand = Plus / Minus
Query: 1 taaatcaatttatgttcataaatttaacatgaaaatattataaatttgtcgtctatagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 taaatcaatttatgttcataaatttaacatgaaaatattataaatttgtcgtctatagtt 1382
Query: 61 ttggctttattttgtacatattaacagacctttttatgttacaacaagcataaaccatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ttggctttattttgtacatattaacagacctttttatgttacaacaagcataaaccatat 1322
Query: 121 gcattcccaagtcccaacttttacgtaatgtcttaatccaataaatacgtgaacatttcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 gcattcccaagtcccaacttttacgtaatgtcttaatccaataaatacgtgaacatttcg 1262
Query: 181 taatttgataattgaccaaccacattcgctgatcatctcaagccacaacggggtatgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 taatttgataattgaccaaccacattcgctgatcatctcaagccacaacggggtatgatg 1202
Query: 241 cacatgtagcaataccacacatgttcttccccatctccatcttgaagtaacctttgtcgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 cacatgtagcaataccacacatgttcttccccatctccatcttgaagtaacctttgtcgc 1142
Query: 301 cccaatccgctccccatgagttcttaataagccaatatggtacaccgtcttcaactccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 cccaatccgctccccatgagttcttaataagccaatatggtacaccgtcttcaactccat 1082
Query: 361 aaccaacggccaaaaccgcgtggttcacatccattggagtacttccacagtgactatcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaccaacggccaaaaccgcgtggttcacatccattggagtacttccacagtgactatcag 1022
Query: 421 tgtaaactccactcttgtaaagccggaacgagtgtataacctcaaatgctatgcttactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tgtaaactccactcttgtaaagccggaacgagtgtataacctcaaatgctatgcttactg 962
Query: 481 gccgtaccaatccaaccgcatgcttcagttcatcttcagcacccagagtaatgttgactg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gccgtaccaatccaaccgcatgcttcagttcatcttcagcacccagagtaatgttgactg 902
Query: 541 agttgaggacttgtacaccaacgttttcagctgaaaatttgcaggtttcatctttaccgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 agttgaggacttgtacaccaacgttttcagctgaaaatttgcaggtttcatctttaccgg 842
Query: 601 tataaggataagctttctctgtgtcgaggccaccgttggattttatgtattcaaaggctt 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 841 tataaggataagctttctctgtgtcgaggccaccgttggatttgatgtattcaaaggctt 782
Query: 661 gagaaggaaggccaccattgcaaccatagttattgaaagctccagcacaatccacaagct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gagaaggaaggccaccattgcaaccatagttattgaaagctccagcacaatccacaagct 722
Query: 721 gttgctcagagagagatattccttttccaaatgcctgatggtaagctgcctcaagagctc 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gttgctcagagagagaaattccttttccaaatgcctgatggtaagctgcctcaagagctc 662
Query: 781 cagttgtgctgaatgtccagcaagatccacaacctccctgatctttgaccggactaacga 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cagttgtgctgaatgtccagcaagatccacaacctccctgatctttgaccggactaacga 602
Query: 841 taccatcttctctccagtcttttgtttcaggaagagctgcttctgtgaccttgtggctgc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taccatcttctctccagtcttttgtttcaggaagagctgcttctgtgaccttgtggctgc 542
Query: 901 cctttaaagtggcagagcagttctgagcagcaccaagcttggtcctttgaaactcttgcc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cctttaaagtggcagagcagttctgagcagcaccaagcttggtcctttgaaactcttgcc 482
Query: 961 atgtcaaatcagcaaattgattaacaccgagtttgtaagataagcctttcttgttggtgg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgtcaaatcagcaaattgattaacaccgagtttgtaagataagcctttcttgttggtgg 422
Query: 1021 atctgatcaaatcaagattctccttgaaaatcgagaatcgaagcttcatctcctccacgt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atctgatcaaatcaagattctccttgaaaatcgagaatcgaagcttcatctcctccacgt 362
Query: 1081 tctgatactttttaccatatcggtgagtgaagcgagcgaaagagagaacgtgacgagatt 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctgatactttttaccatatcggtgagtgaagcgagcgaaagagagaacgtgacgagatt 302
Query: 1141 gacctaagatctgggaaacagattcttctacctcccggagaccatcggagaccattcgga 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gacctaagatctgggaaacagattcttctacctcccggagaccatcggagaccattcgga 242
Query: 1201 tcgggtttgactcatcgaatccgatattagccgctgctgatgcggcgacgagaaccacca 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcgggtttgactcatcgaatccgatattagccgctgctgatgcggcgacgagaaccacca 182
Query: 1261 aaactactgatgataggattgttttcgcagacatggctttctctctctcgttcttacttt 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaactactgatgataggattgttttcgcagacatggctttctctctctcgttcttacttt 122
Query: 1321 tttttttttctcaacgctaatgt 1343
|||||||||||||||||||||||
Sbjct: 121 tttttttttctcaacgctaatgt 99
>At3g45310.1 68416.m04892 cysteine proteinase, putative similar to AALP protein
GI:7230640 from [Arabidopsis thaliana] and barley
aleurain
Length = 1418
Score = 591 bits (298), Expect = e-168
Identities = 583/678 (85%)
Strand = Plus / Minus
Query: 477 actggccgtaccaatccaaccgcatgcttcagttcatcttcagcacccagagtaatgttg 536
||||||| |||||| || ||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 839 actggccttaccaacccgaccgcgtgcttcagttcatcttctgcacccagggtaatgttg 780
Query: 537 actgagttgaggacttgtacaccaacgttttcagctgaaaatttgcaggtttcatcttta 596
|| |||| ||||||||||||| | ||||| ||||||||||||||| | |||||
Sbjct: 779 acagagtcacggacttgtacaccgatgtttttcgctgaaaatttgcagccaccgtctttt 720
Query: 597 ccggtataaggataagctttctctgtgtcgaggccaccgttggattttatgtattcaaag 656
||||| ||||||||||| | ||| |||||||| ||||||||| |||| ||||||||||||
Sbjct: 719 ccggtgtaaggataagcctcctccgtgtcgagcccaccgttgtatttaatgtattcaaag 660
Query: 657 gcttgagaaggaaggccaccattgcaaccatagttattgaaagctccagcacaatccaca 716
|||||||||||||| ||||||| |||||| |||||||||||| |||||||||||||||
Sbjct: 659 gcttgagaaggaagtccaccatgacaaccaaagttattgaaagtaccagcacaatccaca 600
Query: 717 agctgttgctcagagagagatattccttttccaaatgcctgatggtaagctgcctcaaga 776
||||||||||| || | ||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 599 agctgttgctcggacaaagatattccttttccaaatgcttgatggtaagctgcttcaaga 540
Query: 777 gctccagttgtgctgaatgtccagcaagatccacaacctccctgatctttgaccggacta 836
|||||||||||||| |||||||| |||||||||||| |||||| ||||| || || |||
Sbjct: 539 gctccagttgtgctaaatgtccaacaagatccacaatgtccctgttctttcacagggcta 480
Query: 837 acgataccatcttctctccagtcttttgtttcaggaagagctgcttctgtgaccttgtgg 896
|| ||||||||||||||||| |||||||| || |||| | ||||| |||| |||||||
Sbjct: 479 acaataccatcttctctccaatcttttgtgtctggaactgtagcttcagtgatcttgtgg 420
Query: 897 ctgccctttaaagtggcagagcagttctgagcagcaccaagcttggtcctttgaaactct 956
|| ||||||||||| ||||| ||||| |||||||| ||||||||| ||||||||||||
Sbjct: 419 ctaccctttaaagtagcagaacagttttgagcagctccaagcttgtatctttgaaactct 360
Query: 957 tgccatgtcaaatcagcaaattgattaacaccgagtttgtaagataagcctttcttgttg 1016
||||||||||| |||||||| ||||||| | |||||| || |||||||||||||| ||
Sbjct: 359 tgccatgtcaagtcagcaaactgattaagagagagtttataggataagcctttcttatta 300
Query: 1017 gtggatctgatcaaatcaagattctccttgaaaatcgagaatcgaagcttcatctcctcc 1076
||||||||||| ||||||||||||||||| |||| ||||||| | |||||||||||||
Sbjct: 299 gtggatctgattaaatcaagattctccttaaaaacagagaatcttaacttcatctcctcc 240
Query: 1077 acgttctgatactttttaccatatcggtgagtgaagcgagcgaaagagagaacgtgacga 1136
|| |||||||||| || ||||| | |||||||||||||| || || ||||| |||||
Sbjct: 239 acactctgatacttcttcccatacctgtgagtgaagcgagaaaaggatagaacatgacgg 180
Query: 1137 gattgacctaagatctgg 1154
|| || |||| |||||||
Sbjct: 179 gactgtcctaggatctgg 162
Score = 143 bits (72), Expect = 4e-33
Identities = 141/164 (85%)
Strand = Plus / Minus
Query: 237 gatgcacatgtagcaataccacacatgttcttccccatctccatcttgaagtaacctttg 296
|||| |||||| |||| ||||||||||||||| ||||| |||||||||||||| || |||
Sbjct: 1079 gatgaacatgttgcaacaccacacatgttctttcccatttccatcttgaagtagccattg 1020
Query: 297 tcgccccaatccgctccccatgagttcttaataagccaatatggtacaccgtcttcaact 356
|| ||||| || |||||||||||||||| |||||||| || || || |||||||||||
Sbjct: 1019 tctccccattcacctccccatgagttctttataagccagtacgggacgtcgtcttcaact 960
Query: 357 ccataaccaacggccaaaaccgcgtggttcacatccattggagt 400
||||||||||| || || || || ||||| ||||||||||||||
Sbjct: 959 ccataaccaactgctaacactgcatggtttacatccattggagt 916
>At5g60540.1 68418.m07591 SNO glutamine amidotransferase family protein similar
to pyridoxine synthesis protein PDX2 [Cercospora
nicotianae] GI:9954418; contains Pfam profile PF01174:
SNO glutamine amidotransferase family
Length = 1174
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 859 cttttgtttcaggaagagc 877
|||||||||||||||||||
Sbjct: 714 cttttgtttcaggaagagc 696
>At1g75210.1 68414.m08737 5' nucleotidase family protein contains Pfam profile:
PF05761 5' nucleotidase family
Length = 2274
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1314 ttacttttttttttttctc 1332
|||||||||||||||||||
Sbjct: 76 ttacttttttttttttctc 58
>At1g66550.1 68414.m07561 WRKY family transcription factor similar to DNA-binding
protein 3 [Nicotiana tabacum] GI:7406995
Length = 765
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1032 tcaagattctccttgaaaa 1050
|||||||||||||||||||
Sbjct: 68 tcaagattctccttgaaaa 86
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,400
Number of Sequences: 29161
Number of extensions: 52400
Number of successful extensions: 1321
Number of sequences better than 10.0: 45
length of query: 1343
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1325
effective length of database: 43,533,334
effective search space: 57681667550
effective search space used: 57681667550
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)