BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.12.cl.1288.Contig1
(2614 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48970.1 68418.m06059 mitochondrial substrate carrier fa... 757 0.0
At2g16640.1 68415.m01910 chloroplast outer membrane protein... 42 0.024
At1g79860.1 68414.m09329 expressed protein contains Pfam pr... 40 0.093
At1g51500.1 68414.m05796 ABC transporter family protein sim... 40 0.093
At1g27750.1 68414.m03391 ubiquitin system component Cue dom... 40 0.093
>At5g48970.1 68418.m06059 mitochondrial substrate carrier family protein contains
Pfam profile: PF00153 mitochondrial carrier protein
Length = 1835
Score = 757 bits (382), Expect = 0.0
Identities = 382/382 (100%)
Strand = Plus / Minus
Query: 2230 ggtggaaccgctggacatgttcaagcgtcagctccagtgtagcaactgcaagggtttagg 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 ggtggaaccgctggacatgttcaagcgtcagctccagtgtagcaactgcaagggtttagg 1776
Query: 2290 acacaacaagaagacctgcaaagctgtatcttaagtattagggagagagagagaaataga 2349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 acacaacaagaagacctgcaaagctgtatcttaagtattagggagagagagagaaataga 1716
Query: 2350 gaggagagacatggttaggacaaatttgtagttatatagctgactttgcccaacattttg 2409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 gaggagagacatggttaggacaaatttgtagttatatagctgactttgcccaacattttg 1656
Query: 2410 gttttggttcttctgtttgttgggtttttgagaatgatcttaaagggtaaaaatctcctt 2469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 gttttggttcttctgtttgttgggtttttgagaatgatcttaaagggtaaaaatctcctt 1596
Query: 2470 caggttgaaacccaaacgtgaagagagcaaagcggctcagaatctctgttcctaaatggc 2529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 caggttgaaacccaaacgtgaagagagcaaagcggctcagaatctctgttcctaaatggc 1536
Query: 2530 attaaacttgatgaaagattttacataaatttttttgtatgtaatttgatttttaacaaa 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 attaaacttgatgaaagattttacataaatttttttgtatgtaatttgatttttaacaaa 1476
Query: 2590 aaatttcaatgaatcttttcaa 2611
||||||||||||||||||||||
Sbjct: 1475 aaatttcaatgaatcttttcaa 1454
>At2g16640.1 68415.m01910 chloroplast outer membrane protein, putative similar to
chloroplast protein import component Toc159 [Pisum
sativum] GI:8489806, chloroplast outer envelope protein
86 [Pisum sativum] GI:599958, GTP-binding protein [Pisum
sativum] GI:576509
Length = 3952
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2332 gagagagagagaaatagagag 2352
|||||||||||||||||||||
Sbjct: 26 gagagagagagaaatagagag 6
>At1g79860.1 68414.m09329 expressed protein contains Pfam profile PF03759: Domain
of unknown function (DUF315)
Length = 1704
Score = 40.1 bits (20), Expect = 0.093
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2331 ggagagagagagaaatagagagga 2354
||||||||||||||| ||||||||
Sbjct: 49 ggagagagagagaaagagagagga 26
>At1g51500.1 68414.m05796 ABC transporter family protein similar to GB:AAF61569
from [Bombyx mori]
Length = 2329
Score = 40.1 bits (20), Expect = 0.093
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 2325 tattagggagagagagagaaatagagag 2352
|||||| |||||||||||||| ||||||
Sbjct: 57 tattagagagagagagagaaagagagag 30
>At1g27750.1 68414.m03391 ubiquitin system component Cue domain-containing protein
very low similarity to ASC-1 complex subunit P100 [Homo
sapiens] GI:12061187; contains Pfam profile PF02845: CUE
domain
Length = 6072
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1415 tttgaaaagcaacaccatca 1434
||||||||||||||||||||
Sbjct: 469 tttgaaaagcaacaccatca 450
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,545
Number of Sequences: 29161
Number of extensions: 89545
Number of successful extensions: 2306
Number of sequences better than 10.0: 72
length of query: 2614
length of database: 44,058,232
effective HSP length: 19
effective length of query: 2595
effective length of database: 43,504,173
effective search space: 112893328935
effective search space used: 112893328935
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)