BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.12.cl.1269.Contig2
(3286 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF04891.1| Mutator-like transposase [Arabidopsis thalia... 1387 0.0
pir||H84710 Mutator-like transposase [imported] - Arabidops... 827 0.0
pir||B86202 hypothetical protein [imported] - Arabidopsis t... 744 0.0
dbj|BAB09619.1| mutator-like transposase-like protein [Arab... 662 0.0
ref|NP_917506.1| putative Mutator-like transposase [Oryza s... 632 e-179
gb|AAF26087.1| unknown protein [Arabidopsis thaliana]|gi|30... 395 e-108
ref|NP_919494.1| putative maize transposon MuDR mudrA-like ... 357 8e-97
dbj|BAB10320.1| mutator-like transposase-like protein [Arab... 331 8e-89
gb|AAL36266.1| putative mudrA protein [Arabidopsis thaliana... 327 1e-87
gb|AAF26998.1| putative mudrA protein [Arabidopsis thaliana] 327 1e-87
>gb|AAF04891.1| Mutator-like transposase [Arabidopsis
thaliana]|gi|18389286|gb|AAL67086.1| putative Mutator
transposase [Arabidopsis
thaliana]|gi|20465953|gb|AAM20162.1| putative mutator
transposase [Arabidopsis thaliana]
Length = 757
Score = 1387 bits (3591), Expect = 0.0
Identities = 683/757 (90%), Positives = 686/757 (90%)
Frame = +1
Query: 682 MANRDLMLXXXXXXXXXXXXXXXXXXXXXXXXXXNHVDVELGQGHNMDLGLAXXXXXXXE 861
MANRDLML NHVDVELGQGHNMDLGLA E
Sbjct: 1 MANRDLMLGQNRNIGIGQGQSLVLGHSHSLGLGQNHVDVELGQGHNMDLGLAHHDHDHHE 60
Query: 862 IDLGNPHDDHELDLGNSEDQDGEDXXXXXXXDYMNENKISVDQKPGHDDVDPDLVLSSQN 1041
IDLGNPHDDHELDLGNSEDQDGED DYMNEN+ISVDQKPGHDDVDPDLVLSSQN
Sbjct: 61 IDLGNPHDDHELDLGNSEDQDGEDHHHHHHHDYMNENEISVDQKPGHDDVDPDLVLSSQN 120
Query: 1042 HEFSLSDNNHQLVVGENHELDDNLELAVDSSHELEIDQHGEMVMVSTPVQARALTADMTY 1221
HEFSLSDNNHQLVVGENHELDDNLELAVDSSHELEIDQHGEMVMVSTPVQARALTADMTY
Sbjct: 121 HEFSLSDNNHQLVVGENHELDDNLELAVDSSHELEIDQHGEMVMVSTPVQARALTADMTY 180
Query: 1222 QLTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGV 1401
QLTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGV
Sbjct: 181 QLTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGV 240
Query: 1402 PTFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGIT 1581
PTFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGIT
Sbjct: 241 PTFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGIT 300
Query: 1582 LSYKQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFI 1761
LSYKQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFI
Sbjct: 301 LSYKQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFI 360
Query: 1762 SFQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVNEENDENW 1941
SFQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIV+EENDENW
Sbjct: 361 SFQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVDEENDENW 420
Query: 1942 MWFLCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSENSRKEFN 2121
MWFLCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSE+ RKEFN
Sbjct: 421 MWFLCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSESFRKEFN 480
Query: 2122 NTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQRFGHLT 2301
NTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQRFGHLT
Sbjct: 481 NTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQRFGHLT 540
Query: 2302 ANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTXXXXXXXXX 2481
ANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPT
Sbjct: 541 ANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTAERRVAEAL 600
Query: 2482 XXXXTYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNV 2661
TYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNV
Sbjct: 601 ELARTYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNV 660
Query: 2662 HRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIINXXXXXXXXXX 2841
HRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIIN
Sbjct: 661 HRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIINPPKSLRPPGR 720
Query: 2842 XXXXXXXAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI 2952
AEDRGRVKRVVHCSRCNQTGHFRTTCAAPI
Sbjct: 721 PRKRRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI 757
>pir||H84710 Mutator-like transposase [imported] - Arabidopsis
thaliana|gi|2880040|gb|AAC02734.1| putative Mutator-like
transposase [Arabidopsis
thaliana]|gi|20198324|gb|AAM15523.1| putative
Mutator-like transposase [Arabidopsis thaliana]
Length = 754
Score = 827 bits (2137), Expect = 0.0
Identities = 416/703 (59%), Positives = 511/703 (72%), Gaps = 7/703 (0%)
Frame = +1
Query: 865 DLGNPHDDHELDLGNSEDQDGEDXXXXXXXDYMNENKISVD-QKPGHDDVDPDLVLSSQN 1041
++ N +H L L NS E + E K VD Q+ ++ D LS +
Sbjct: 58 EVWNHGQEHALALQNSGTHSEE-----IHEKQLVEGKDEVDSQENQNESYDHTFDLSFPD 112
Query: 1042 HEFSLSDNNHQLVVGENHELDDNLELAV------DSSHELEIDQHGEMVMVSTPVQARAL 1203
++ S + N +L + + +L+DNL+LAV D L I ++ + +Q R+L
Sbjct: 113 NDDSGTSENDKLALLVSQDLNDNLQLAVGHCMNRDPLPGLNISLSQQLELAPPILQCRSL 172
Query: 1204 TADMTYQLTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHA 1383
+ L VG EF DV +CRRALRD AIAL FEMQT+KSDKTRFTAKC+S+GCPWR+H
Sbjct: 173 QTAPEHNLIVGMEFSDVLACRRALRDAAIALRFEMQTVKSDKTRFTAKCNSEGCPWRIHC 232
Query: 1384 AKLPGVPTFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIH 1563
AKLPG+PTFTIRTIH SH+CGGI+HLGH QASVQWVA +V +RL+ NP+CKPKEILE+IH
Sbjct: 233 AKLPGLPTFTIRTIHGSHTCGGISHLGHHQASVQWVADAVTERLKVNPHCKPKEILEQIH 292
Query: 1564 RVHGITLSYKQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNC 1743
+VHGITL+YKQAWRGKERIMA +RGS+EE YRLLP+YC+Q++RTNPGS+A V+GSP D
Sbjct: 293 QVHGITLTYKQAWRGKERIMAAVRGSYEEDYRLLPRYCDQIRRTNPGSVAVVHGSPVDGS 352
Query: 1744 FQRLFISFQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVNE 1923
FQ+ FISFQASI GFLNACRPL+GLDRT LKSKY+GTLLLATGFDG+GA+FPLAF I++E
Sbjct: 353 FQQFFISFQASICGFLNACRPLIGLDRTVLKSKYVGTLLLATGFDGEGAVFPLAFAIISE 412
Query: 1924 ENDENWMWFLCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSEN 2103
END +W WFL EL LLE N+ENMP+LTILS R + IV+GV+ NFPTAFHG C+ L+E+
Sbjct: 413 ENDSSWQWFLSELRQLLEVNSENMPKLTILSSRDQSIVDGVDTNFPTAFHGLCVHCLTES 472
Query: 2104 SRKEFNNTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQ 2283
R +FNN++LVN +WEAA+ LT EFE K+ EI +IS +AA WIR I WAT FEG
Sbjct: 473 VRTQFNNSILVNLVWEAAKCLTDFEFEGKMGEIAQISPEAASWIRNIQHSQWATYCFEGT 532
Query: 2284 RFGHLTANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTXXX 2463
RFGHLTAN+ ESLNSW+ +ASGLPIIQM+E IRRQLMT FNERRETSMQW+ +LVP+
Sbjct: 533 RFGHLTANVSESLNSWVQDASGLPIIQMLESIRRQLMTLFNERRETSMQWSGMLVPSAER 592
Query: 2464 XXXXXXXXXXTYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQLYGLPCAHAVAALL 2643
Y V +ANEA+FEV++ EG IVDIR R C CRGW+LYGLPC+HAVAALL
Sbjct: 593 HVLEAIEECRLYPVHKANEAQFEVMTSEGKWIVDIRCRTCYCRGWELYGLPCSHAVAALL 652
Query: 2644 SCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIINXXXX 2823
+CRQNV+RFTES FTVA YR+TY++TIHP+PDK+ W+ +E + + +I
Sbjct: 653 ACRQNVYRFTESYFTVANYRRTYAETIHPVPDKTEWK-TTEPAGESGEDGEEIVIRPPRD 711
Query: 2824 XXXXXXXXXXXXXAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI 2952
EDRGR KRVV CSRCNQ GHFRTTC API
Sbjct: 712 LRQPPRPKKRRSQGEDRGRQKRVVRCSRCNQAGHFRTTCTAPI 754
>pir||B86202 hypothetical protein [imported] - Arabidopsis
thaliana|gi|7523705|gb|AAF63144.1| Similar to maize
transposon mudrA protein [Arabidopsis
thaliana]|gi|46518483|gb|AAS99723.1| At1g06740
[Arabidopsis thaliana]
Length = 726
Score = 744 bits (1921), Expect = 0.0
Identities = 385/725 (53%), Positives = 497/725 (68%), Gaps = 7/725 (0%)
Frame = +1
Query: 799 ELGQGHNMDLGLAXXXXXXXEIDLGNPHDDHELDLGNSEDQDGEDXXXXXXXDYMNENKI 978
EL GH D A + +G + +EL N +D G D +N+N
Sbjct: 29 ELFVGH--DYNSAFEQLLDINLQIGASCNGNEL-WNNLQDHRGIDETKEVACLDVNQND- 84
Query: 979 SVDQKPGHDDVDPDLVLSSQNHEFSLSDNNHQLVVGENHELDDNLELAVDSSHELEIDQH 1158
P +DD + D ++ + H++ E+ + DD LEL + S E
Sbjct: 85 GYRSFPDNDDSEID-----KSTVIEATGAIHKV---ESQDTDDKLELEMSQSTEFS---- 132
Query: 1159 GEMVMVSTPVQARALT-ADMTYQLTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTR 1335
+ VM S Q +++ A +++ VG EF D +CRRA+++ AI+L FEM+TIKSDKTR
Sbjct: 133 QKSVMPSPSSQCWSMSGAGTDHEMVVGMEFSDAYACRRAIKNAAISLRFEMRTIKSDKTR 192
Query: 1336 FTAKCSSDGCPWRVHAAKLPGVPTFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRL 1515
FTAKC+S GCPWR+H AK+ PTFTIRTIH SH+CGGI+HLGHQQASVQWVA V ++L
Sbjct: 193 FTAKCNSKGCPWRIHCAKVSNAPTFTIRTIHGSHTCGGISHLGHQQASVQWVADVVAEKL 252
Query: 1516 RENPNCKPKEILEEIHRVHGITLSYKQAWRGKERIMA-----TMRGSFEEGYRLLPQYCE 1680
+ENP+ KPKEILEEI+RVHGI+LSYKQAWRGKERIMA T+RGSFEE YRLLPQYC+
Sbjct: 253 KENPHFKPKEILEEIYRVHGISLSYKQAWRGKERIMATLRGSTLRGSFEEEYRLLPQYCD 312
Query: 1681 QVKRTNPGSIASVYGSPADNCFQRLFISFQASIYGFLNACRPLLGLDRTYLKSKYLGTLL 1860
+++R+NPGS+A V+ +P D CFQ LFISFQASI GFLNACRPL+ LD T LKSKY GTLL
Sbjct: 313 EIRRSNPGSVAVVHVNPIDGCFQHLFISFQASISGFLNACRPLIALDSTVLKSKYPGTLL 372
Query: 1861 LATGFDGDGALFPLAFGIVNEENDENWMWFLCELHNLLETNTENMPRLTILSDRQKGIVE 2040
LATGFDGDGA+FPLAF IVNEEND+NW FL EL +L+ ENMP+LTILS ++ +V+
Sbjct: 373 LATGFDGDGAVFPLAFAIVNEENDDNWHRFLSELRKILD---ENMPKLTILSSGERPVVD 429
Query: 2041 GVEQNFPTAFHGFCMRHLSENSRKEFNNTLLVNYLWEAAQALTVIEFEAKILEIEEISQD 2220
GVE NFP AFHGFC+ +L+E ++EF +++LV+ WEAA LTV+EF++KI +IE+IS +
Sbjct: 430 GVEANFPAAFHGFCLHYLTERFQREFQSSVLVDLFWEAAHCLTVLEFKSKINKIEQISPE 489
Query: 2221 AAYWIRRIPPRLWATAYFEGQRFGHLTANIV-ESLNSWIAEASGLPIIQMMECIRRQLMT 2397
A+ WI+ P WA++YFEG RFG LTAN++ ESL++W+ + SGLPIIQ MECI R L+
Sbjct: 490 ASLWIQNKSPARWASSYFEGTRFGQLTANVITESLSNWVEDTSGLPIIQTMECIHRHLIN 549
Query: 2398 WFNERRETSMQWTSILVPTXXXXXXXXXXXXXTYQVLRANEAEFEVISHEGNNIVDIRNR 2577
ERRETS+ W+++LVP+ ++V RANEAEFEV++ EGN +V+I N
Sbjct: 550 MLKERRETSLHWSNVLVPSAEKQMLAAIEQSRAHRVYRANEAEFEVMTCEGNVVVNIENC 609
Query: 2578 CCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHWRE 2757
CLC WQ+YGLPC+HAV ALLSC ++V+R+TESCFTV YR+ Y++T+ PI DK W+E
Sbjct: 610 SCLCGRWQVYGLPCSHAVGALLSCEEDVYRYTESCFTVENYRRAYAETLEPISDKVQWKE 669
Query: 2758 LSEGDPNVNKAALDAIINXXXXXXXXXXXXXXXXXAEDRGRVKRVVHCSRCNQTGHFRTT 2937
N + D+ AEDR RV+RVVHC RCNQTGHFRTT
Sbjct: 670 --------NDSERDSENVIKTPKAMKGAPRKRRVRAEDRDRVRRVVHCGRCNQTGHFRTT 721
Query: 2938 CAAPI 2952
C AP+
Sbjct: 722 CTAPM 726
>dbj|BAB09619.1| mutator-like transposase-like protein [Arabidopsis
thaliana]|gi|16648945|gb|AAL24324.1| mutator-like
transposase-like protein [Arabidopsis
thaliana]|gi|20259876|gb|AAM13285.1| mutator-like
transposase-like protein [Arabidopsis thaliana]
Length = 597
Score = 662 bits (1708), Expect = 0.0
Identities = 319/576 (55%), Positives = 390/576 (67%)
Frame = +1
Query: 1225 LTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVP 1404
L VG+EFPDV++CRR L+D+AIALHF+++ +KSD++RF AKCS +GCPWR+HAAK PGV
Sbjct: 25 LAVGKEFPDVETCRRTLKDLAIALHFDLRIVKSDRSRFIAKCSKEGCPWRIHAAKCPGVQ 84
Query: 1405 TFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITL 1584
TFT+RT++ H+C G+ L HQQASV WVA SVE R+R+NP KPKEIL++I HG+ +
Sbjct: 85 TFTVRTLNSEHTCEGVRDLHHQQASVGWVARSVEARIRDNPQYKPKEILQDIRDEHGVAV 144
Query: 1585 SYKQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFIS 1764
SY QAWRGKER MA + G++EEGYR LP YCEQ+K NPGS ASV +NCFQRLFI+
Sbjct: 145 SYMQAWRGKERSMAALHGTYEEGYRFLPAYCEQIKLVNPGSFASVSALGPENCFQRLFIA 204
Query: 1765 FQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVNEENDENWM 1944
++A I GF ++CRPLL LDR +LK KYLG +L A D D LFPLA IV+ E+DENW
Sbjct: 205 YRACISGFFSSCRPLLELDRAHLKGKYLGAILCAAAVDADDGLFPLAIAIVDNESDENWS 264
Query: 1945 WFLCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSENSRKEFNN 2124
WFL EL LL NT++MP+LTILS+RQ +VE VE +FPTAFHGFC+R++SEN R F N
Sbjct: 265 WFLSELRKLLGMNTDSMPKLTILSERQSAVVEAVETHFPTAFHGFCLRYVSENFRDTFKN 324
Query: 2125 TLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQRFGHLTA 2304
T LVN W A ALT EFE K E+ EISQD W P LWA AYF+G R+GH
Sbjct: 325 TKLVNIFWSAVYALTPAEFETKSNEMIEISQDVVQWFELYLPHLWAVAYFQGVRYGHFGL 384
Query: 2305 NIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTXXXXXXXXXX 2484
I E L +W E LPIIQMME IR Q+ +WF+ RRE SM W SILVP+
Sbjct: 385 GITEVLYNWALECHELPIIQMMEHIRHQISSWFDNRRELSMGWNSILVPSAERRITEAVA 444
Query: 2485 XXXTYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVH 2664
YQVLRANE EFE++S E NIVDIR R C CR WQ+YGLPCAHA AAL+SC +NVH
Sbjct: 445 DARCYQVLRANEVEFEIVSTERTNIVDIRTRDCSCRRWQIYGLPCAHAAAALISCGRNVH 504
Query: 2665 RFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIINXXXXXXXXXXX 2844
F E CFTV++Y++TYSQ I IPD+S W++ E I
Sbjct: 505 LFAEPCFTVSSYQQTYSQMIGEIPDRSLWKDEGE---EAGGGVESLRIRPPKTRRPPGRP 561
Query: 2845 XXXXXXAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI 2952
E+ R KR+V C RC+ GH + C PI
Sbjct: 562 KKKVVRVENLKRPKRIVQCGRCHLLGHSQKKCTQPI 597
>ref|NP_917506.1| putative Mutator-like transposase [Oryza sativa (japonica
cultivar-group)]|gi|20521310|dbj|BAB91824.1| putative
mutator-like transposase [Oryza sativa (japonica
cultivar-group)]|gi|20804630|dbj|BAB92320.1| putative
Mutator-like transposase [Oryza sativa (japonica
cultivar-group)]
Length = 609
Score = 632 bits (1631), Expect = e-179
Identities = 301/574 (52%), Positives = 387/574 (66%), Gaps = 1/574 (0%)
Frame = +1
Query: 1225 LTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVP 1404
L +GQEF DV +CRRA++DMAIA+HFE++ +KSD++RF AKC+ +GCPWRVH AK GVP
Sbjct: 36 LVIGQEFVDVHACRRAVKDMAIAMHFELRVVKSDRSRFIAKCAREGCPWRVHVAKCHGVP 95
Query: 1405 TFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITL 1584
TFT+RT+H H+C G+ L H QA+V WVA SVE LR+NP KPKEIL++I HG+ +
Sbjct: 96 TFTVRTLHGEHTCDGVRDLHHHQATVGWVARSVEATLRDNPQYKPKEILQDIREQHGVAV 155
Query: 1585 SYKQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFIS 1764
SY QAWRGKER MA + G+ E+GYR LP YCEQ+ +TNPGS+A G+ DN FQRLF+S
Sbjct: 156 SYMQAWRGKERSMAAVHGTLEDGYRFLPAYCEQIVQTNPGSVAIYKGTGPDNSFQRLFVS 215
Query: 1765 FQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVNEENDENWM 1944
F ASI+GFLNACRPLL +D+ LK KYLGTLL A+ D + +FPLAFGIV+ E+DENWM
Sbjct: 216 FHASIHGFLNACRPLLEIDKADLKGKYLGTLLCASAVDAENMMFPLAFGIVDAESDENWM 275
Query: 1945 WFLCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSENSRKEFNN 2124
WF EL +L NT+ MP LTILS+RQ +VE VE NFPTAFHGFC+R++SEN R EF N
Sbjct: 276 WFFSELRKMLGVNTDKMPVLTILSERQSQVVEAVEVNFPTAFHGFCLRYVSENFRDEFKN 335
Query: 2125 TLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQRFGHLTA 2304
L+N W A ALT EF++K+ ++ ++ QD W +R PP LWA +YFEG R+GH
Sbjct: 336 PKLLNIFWSAVYALTAAEFDSKVNDMVQV-QDVMPWFQRFPPNLWAVSYFEGIRYGHFNL 394
Query: 2305 NIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTXXXXXXXXXX 2484
I E L +W E PI+Q +E I+ QL WF ER+ ++ + SILVP+
Sbjct: 395 GITEILYNWAMECHEFPIVQTVEHIKHQLTCWFVERQNLALSYNSILVPSAEKLISEAIA 454
Query: 2485 XXXTYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVH 2664
YQVLRAN+ EFE++S E NIVD + RCC CR WQ+YG+PCAHAVAALLSC ++
Sbjct: 455 DSGCYQVLRANKVEFEIVSSERTNIVDTQARCCSCRRWQIYGIPCAHAVAALLSCGEDPR 514
Query: 2665 RFTESCFTVATYRKTYSQTIHPIPDKSHWR-ELSEGDPNVNKAALDAIINXXXXXXXXXX 2841
+ CF++ YR+TYSQ I+ IPD+S W S +KA A++
Sbjct: 515 LYAHECFSIMKYRETYSQPIYSIPDRSQWNLPFSFAQGAGSKAY--AVLRPPKIRRPPGR 572
Query: 2842 XXXXXXXAEDRGRVKRVVHCSRCNQTGHFRTTCA 2943
E R KR+V C RC+ GH + C+
Sbjct: 573 PKMKILKIESLKRPKRIVQCGRCHLLGHSQKKCS 606
>gb|AAF26087.1| unknown protein [Arabidopsis thaliana]|gi|30793999|gb|AAP40449.1|
unknown protein [Arabidopsis thaliana]
Length = 777
Score = 395 bits (1014), Expect = e-108
Identities = 217/579 (37%), Positives = 328/579 (56%), Gaps = 9/579 (1%)
Frame = +1
Query: 1231 VGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVPTF 1410
VGQ F +V R ALR AIA F + K+D R T KC ++GCPWR+HA++L
Sbjct: 206 VGQRFKNVGEFREALRKYAIANQFGFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLI 265
Query: 1411 TIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITLSY 1590
I+ ++ +H+C G + Q S WVAS ++++L+ PN KPK+I+ +I +GI L+Y
Sbjct: 266 CIKKMNPTHTCEGAGGINGLQTSRSWVASIIKEKLKVFPNYKPKDIVSDIKEEYGIQLNY 325
Query: 1591 KQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFISFQ 1770
QAWRGKE ++GS+++GY+ LP +CE++ TNPGS+A+ + + D+ F R+F+SF
Sbjct: 326 FQAWRGKEIAREQLQGSYKDGYKQLPLFCEKIMETNPGSLAT-FTTKEDSSFHRVFVSFH 384
Query: 1771 ASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVNEENDENWMWF 1950
AS++GFL ACRPL+ LD LKSKY GTLL AT DGD +FPLAF +V+ E D+NW WF
Sbjct: 385 ASVHGFLEACRPLVFLDSMQLKSKYQGTLLAATSVDGDDEVFPLAFAVVDAETDDNWEWF 444
Query: 1951 LCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSENSRKEFN--- 2121
L +L +LL T +T ++DRQK + E + + F +FH +C+R+L++ K+
Sbjct: 445 LLQLRSLLSTPC----YITFVADRQKNLQESIPKVFEKSFHAYCLRYLTDELIKDLKGPF 500
Query: 2122 ----NTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWI-RRIPPRLWATAYFEGQR 2286
L+V+ + AA A FE + I+ +S +A WI ++ P WA AYF G R
Sbjct: 501 SHEIKRLIVDDFYSAAYAPRADSFERHVENIKGLSPEAYDWIVQKSQPDHWANAYFRGAR 560
Query: 2287 FGHLTANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTXXXX 2466
+ H+T++ E SW ++A+ LPI QM++ IR ++M + RR ++ + L P+
Sbjct: 561 YNHMTSHSGEPFFSWASDANDLPITQMVDVIRGKIMGLIHVRRISANEANGNLTPSMEVK 620
Query: 2467 XXXXXXXXXTYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQLYGLPCAHAVAALLS 2646
T V + + + E +V++ C C+GWQL GLPC HAVA +
Sbjct: 621 LEKESLRAQTVHVAPSADNNLFQVRGETYELVNMAECDCSCKGWQLTGLPCHHAVAVINY 680
Query: 2647 CRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAI-INXXXX 2823
+N + + FTVA YR TY+Q+I+P+P L EG+ + A+ +
Sbjct: 681 YGRNPYDYCSKYFTVAYYRSTYAQSINPVP-------LLEGEMCRESSGGSAVTVTPPPT 733
Query: 2824 XXXXXXXXXXXXXAEDRGRVKRVVHCSRCNQTGHFRTTC 2940
AE+ +KR + CSRC GH ++TC
Sbjct: 734 RRPPGRPPKKKTPAEE--VMKRQLQCSRCKGLGHNKSTC 770
>ref|NP_919494.1| putative maize transposon MuDR mudrA-like protein [Oryza sativa
(japonica cultivar-group)]|gi|18542933|gb|AAK00423.2|
Putative maize transposon MuDR mudrA-like protein [Oryza
sativa]|gi|31429779|gb|AAP51781.1| putative maize
transposon MuDR mudrA-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 937
Score = 357 bits (917), Expect = 8e-97
Identities = 203/589 (34%), Positives = 299/589 (50%), Gaps = 17/589 (2%)
Frame = +1
Query: 1231 VGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVPTF 1410
VGQEF +VK R L AI F + IK++ TR T KC +GC WR+HA++ F
Sbjct: 371 VGQEFDNVKDFRAQLCKYAIGKGFVYRFIKNETTRVTVKCVGEGCTWRLHASESSRNKKF 430
Query: 1411 TIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITLSY 1590
I+ + + H+CGG + G ++A+ QW+ + ++++L ENP KPK++++EI+ +G+ L+Y
Sbjct: 431 VIKKMTDEHTCGGGSGEGQRRATRQWLTTVIKEKLHENPLFKPKDLVKEIYEEYGVMLTY 490
Query: 1591 KQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFISFQ 1770
Q WRG+E + + E Y LP YCE++ TNPGSIA + D F+R F++F
Sbjct: 491 SQVWRGREVAQKELYHAIRETYSHLPWYCERLLETNPGSIA-LLSPMVDTKFRRFFVAFH 549
Query: 1771 ASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVNEENDENWMWF 1950
AS++GF N CRPL+ LD+ LK+ LL+A G D D +FP+AF +V +EN E+W+WF
Sbjct: 550 ASLHGFTNGCRPLIFLDKVPLKATNEYKLLVAAGVDADDGVFPVAFNVVEDENYESWVWF 609
Query: 1951 LCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSENSRKEFN--- 2121
L +L L+ + +T LS QKG+ V Q F + H FC+ H+ E + E
Sbjct: 610 LMQLRYALQNHNYPYNAMTFLSSGQKGLDAAVPQVFEESHHAFCLHHIMEEFKGELRKGP 669
Query: 2122 -----NTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQR 2286
+V AAQA ++ +F A I I IS +AA WI P W+ A F G R
Sbjct: 670 WSQQIRDGMVEDFTRAAQACSIEDFNASIESIRNISTEAADWIIASKPEHWSDAIFRGCR 729
Query: 2287 FGHLTANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTXXXX 2466
+ H ++NIV++ N+WI I+ M++ +R ++M RRE+ W+ L P+
Sbjct: 730 YDHFSSNIVDAFNNWIPTKKEGSIVLMIDSLRMKIMEVIEARRESCKSWSGPLTPSMEFK 789
Query: 2467 XXXXXXXXXTYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQLYGLPCAHAVAALLS 2646
VL ++E FEV +V++ N C CR WQL GLPC HAVA
Sbjct: 790 VQDEMSKAGKLTVLCSSETVFEV-RGSAIYVVNLANWECTCRRWQLSGLPCMHAVAVFNR 848
Query: 2647 CRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIINXXXXX 2826
++ + + F + +Y YS I PIPD ++
Sbjct: 849 VGRSFYDYCSKFFRIESYHLAYSGAIFPIPD----------------------MDTVDFS 886
Query: 2827 XXXXXXXXXXXXAEDRGRVKR---------VVHCSRCNQTGHFRTTCAA 2946
D+ R KR V CSRC Q GH + TC A
Sbjct: 887 AGANLIPPPKPRTSDKPRRKRFNPNKIPTVVRLCSRCKQAGHNKATCEA 935
>dbj|BAB10320.1| mutator-like transposase-like protein [Arabidopsis
thaliana]|gi|22531088|gb|AAM97048.1| unknown protein
[Arabidopsis thaliana]|gi|23197938|gb|AAN15496.1| unknown
protein [Arabidopsis thaliana]
Length = 757
Score = 331 bits (848), Expect = 8e-89
Identities = 197/583 (33%), Positives = 300/583 (50%), Gaps = 11/583 (1%)
Frame = +1
Query: 1231 VGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVPTF 1410
V Q F R AL +IA F + K+D R + KC + GCPWR+ A++L
Sbjct: 186 VDQRFNSFTEFRDALHKYSIAHGFTYKYKKNDSHRVSVKCKAQGCPWRITASRLSTTQLI 245
Query: 1411 TIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITLSY 1590
I+ ++ H+C +AS WV S ++++L+ P+ KPK+I E+I R +GI L+Y
Sbjct: 246 CIKKMNTRHTCERAVVKAGYRASRGWVGSIIKEKLKAFPDYKPKDIAEDIKREYGIQLNY 305
Query: 1591 KQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFISFQ 1770
QAWR KE ++GS+++ Y LP +C++++ TNPGSIA ++ + D+ F RLFISF
Sbjct: 306 SQAWRAKEIAREQLQGSYKKAYSQLPSFCKKIRETNPGSIA-IFMTKEDSSFHRLFISFY 364
Query: 1771 ASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVNEENDENWMWF 1950
ASI GF CRPLL LD L SKY G +L+AT D + +FP+AF +V+ E ++NW+WF
Sbjct: 365 ASISGFRQGCRPLLFLDTADLNSKYQGVMLVATAPDAEDGIFPVAFAVVDAETEDNWVWF 424
Query: 1951 LCELHNLLETNTENMPR-LTILSDRQKGIVEGVEQNFPTA-FHGFCMRHLSENSRKEFN- 2121
L L L PR +T ++D Q G+ + F H +C+RHL+E +
Sbjct: 425 LEHLKLALAD-----PRTITFVADFQNGLKTALPLVFEKQHHHAYCLRHLAEKLNMDLQA 479
Query: 2122 ------NTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQ 2283
++N + AA A + + I+ IS DA W+ P WA A FEG+
Sbjct: 480 QFSHEARRFILNDFYAAAYATQPDAYYRSLENIKSISPDAYTWVIESEPLHWANALFEGE 539
Query: 2284 RFGHLTANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQW-TSILVPTXX 2460
R+ H+ + SW++EA LPI QM++ +R +LM + S +W S L PT
Sbjct: 540 RYNHMNSIFGLDFYSWVSEAHELPITQMIDELRAKLMQSIYTHQVQSREWIVSTLTPTNE 599
Query: 2461 XXXXXXXXXXXTYQVLRANEAEFEVISHEGNNIVDIRNRCCLCRGWQLYGLPCAHAVAAL 2640
+ QV + + FEV E N+VDI C C+ W+L GLPC+HAVA +
Sbjct: 600 EKLQKEIELARSLQVSAPHNSLFEV-HGETINLVDINQCDCDCKVWRLTGLPCSHAVAVV 658
Query: 2641 LSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIINXX- 2817
++ + + FT +YR TY+++I+P+P+ + + E P ++ +++
Sbjct: 659 ECIGKSPYEYCSRYFTSESYRLTYAESINPVPNTTMTMMILEEPP------VEGVVSVTP 712
Query: 2818 XXXXXXXXXXXXXXXAEDRGRVKRVVHCSRCNQTGHFRTTCAA 2946
E KR + CS C GH + TC A
Sbjct: 713 PPTRLTPPGRPKSKQVEPLDMFKRQLQCSNCKGLGHNKKTCKA 755
>gb|AAL36266.1| putative mudrA protein [Arabidopsis
thaliana]|gi|18087533|gb|AAL58900.1| AT3g06940/F17A9_9
[Arabidopsis thaliana]|gi|20855902|gb|AAM26637.1|
AT3g06940/F17A9_9 [Arabidopsis
thaliana]|gi|28393919|gb|AAO42367.1| putative mudrA
protein [Arabidopsis thaliana]
Length = 749
Score = 327 bits (837), Expect = 1e-87
Identities = 187/581 (32%), Positives = 297/581 (50%), Gaps = 9/581 (1%)
Frame = +1
Query: 1231 VGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVPTF 1410
V Q F R AL ++A F + K+D R + KC + GCPWR+ A++L
Sbjct: 182 VDQRFNTFLEFRDALHKYSVAHGFAYKYKKNDSHRVSVKCKAQGCPWRITASRLSTTQLI 241
Query: 1411 TIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITLSY 1590
I+ ++ H+C +A+ WV + ++++L+ P+ KPK+I E+I + +GI L+Y
Sbjct: 242 CIKKMNPRHTCERAVIKPGYRATRGWVRTILKEKLKAFPDYKPKDIAEDIKKEYGIQLNY 301
Query: 1591 KQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFISFQ 1770
QAWR KE ++GS++E Y LP CE++K TNPGSIA+ + + D+ F RLFISF
Sbjct: 302 SQAWRAKEIAREQLQGSYKEAYSQLPLICEKIKETNPGSIAT-FMTKEDSSFHRLFISFY 360
Query: 1771 ASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVNEENDENWMWF 1950
ASI GF RPLL LD L SKY G +L+AT D + +FP+AF IV+ E +ENW+WF
Sbjct: 361 ASISGFKQGSRPLLFLDNAILNSKYQGVMLVATASDAEDGIFPVAFAIVDSETEENWLWF 420
Query: 1951 LCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNF-PTAFHGFCMRHLSENSRKEFNNT 2127
L +L L + +T ++D Q G+ + Q F A H +C+ L+E +
Sbjct: 421 LEQLKTALSESR----IITFVADFQNGLKNAIAQVFEKDAHHAYCLGQLAEKLNVDLKGQ 476
Query: 2128 L-------LVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQR 2286
++N + A A T + + + I+ IS DA W+ P WA A F+G+R
Sbjct: 477 FSHEARRYMLNDFYSVAYATTPVGYYLALENIKSISPDAYNWVIESEPHHWANALFQGER 536
Query: 2287 FGHLTANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTXXXX 2466
+ + +N + SW++EA PI QM++ R ++M R+ S +W + L P+
Sbjct: 537 YNKMNSNFGKDFYSWVSEAHEFPITQMIDEFRAKMMQSIYTRQVKSREWVTTLTPSNEEK 596
Query: 2467 XXXXXXXXXTYQVLRANEAEFEVISHEGN-NIVDIRNRCCLCRGWQLYGLPCAHAVAALL 2643
QV + F+V E + +IVDI C C+ W+L GLPC+HA+A +
Sbjct: 597 LQKEIELAQLLQVSSPEGSLFQVNGGESSVSIVDINQCDCDCKTWRLTGLPCSHAIAVIG 656
Query: 2644 SCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIINXXXX 2823
++ + + + TV ++R Y+++I P+P+ R + + P + ++
Sbjct: 657 CIEKSPYEYCSTYLTVESHRLMYAESIQPVPNMD--RMMLDDPP-------EGLVCVTPP 707
Query: 2824 XXXXXXXXXXXXXAEDRGRVKRVVHCSRCNQTGHFRTTCAA 2946
E +KR + CS+C GH + TC A
Sbjct: 708 PTRRTPGRPKIKKVEPLDMMKRQLQCSKCKGLGHNKKTCKA 748
>gb|AAF26998.1| putative mudrA protein [Arabidopsis thaliana]
Length = 609
Score = 327 bits (837), Expect = 1e-87
Identities = 187/581 (32%), Positives = 297/581 (50%), Gaps = 9/581 (1%)
Frame = +1
Query: 1231 VGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVPTF 1410
V Q F R AL ++A F + K+D R + KC + GCPWR+ A++L
Sbjct: 42 VDQRFNTFLEFRDALHKYSVAHGFAYKYKKNDSHRVSVKCKAQGCPWRITASRLSTTQLI 101
Query: 1411 TIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITLSY 1590
I+ ++ H+C +A+ WV + ++++L+ P+ KPK+I E+I + +GI L+Y
Sbjct: 102 CIKKMNPRHTCERAVIKPGYRATRGWVRTILKEKLKAFPDYKPKDIAEDIKKEYGIQLNY 161
Query: 1591 KQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADNCFQRLFISFQ 1770
QAWR KE ++GS++E Y LP CE++K TNPGSIA+ + + D+ F RLFISF
Sbjct: 162 SQAWRAKEIAREQLQGSYKEAYSQLPLICEKIKETNPGSIAT-FMTKEDSSFHRLFISFY 220
Query: 1771 ASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVNEENDENWMWF 1950
ASI GF RPLL LD L SKY G +L+AT D + +FP+AF IV+ E +ENW+WF
Sbjct: 221 ASISGFKQGSRPLLFLDNAILNSKYQGVMLVATASDAEDGIFPVAFAIVDSETEENWLWF 280
Query: 1951 LCELHNLLETNTENMPRLTILSDRQKGIVEGVEQNF-PTAFHGFCMRHLSENSRKEFNNT 2127
L +L L + +T ++D Q G+ + Q F A H +C+ L+E +
Sbjct: 281 LEQLKTALSESR----IITFVADFQNGLKNAIAQVFEKDAHHAYCLGQLAEKLNVDLKGQ 336
Query: 2128 L-------LVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGQR 2286
++N + A A T + + + I+ IS DA W+ P WA A F+G+R
Sbjct: 337 FSHEARRYMLNDFYSVAYATTPVGYYLALENIKSISPDAYNWVIESEPHHWANALFQGER 396
Query: 2287 FGHLTANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPTXXXX 2466
+ + +N + SW++EA PI QM++ R ++M R+ S +W + L P+
Sbjct: 397 YNKMNSNFGKDFYSWVSEAHEFPITQMIDEFRAKMMQSIYTRQVKSREWVTTLTPSNEEK 456
Query: 2467 XXXXXXXXXTYQVLRANEAEFEVISHEGN-NIVDIRNRCCLCRGWQLYGLPCAHAVAALL 2643
QV + F+V E + +IVDI C C+ W+L GLPC+HA+A +
Sbjct: 457 LQKEIELAQLLQVSSPEGSLFQVNGGESSVSIVDINQCDCDCKTWRLTGLPCSHAIAVIG 516
Query: 2644 SCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHWRELSEGDPNVNKAALDAIINXXXX 2823
++ + + + TV ++R Y+++I P+P+ R + + P + ++
Sbjct: 517 CIEKSPYEYCSTYLTVESHRLMYAESIQPVPNMD--RMMLDDPP-------EGLVCVTPP 567
Query: 2824 XXXXXXXXXXXXXAEDRGRVKRVVHCSRCNQTGHFRTTCAA 2946
E +KR + CS+C GH + TC A
Sbjct: 568 PTRRTPGRPKIKKVEPLDMMKRQLQCSKCKGLGHNKKTCKA 608
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 137
effective length of database: 370,057,092
effective search space used: 354144637044
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)