BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.12.cl.1266.Contig1
(2372 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45000.1 68415.m05603 expressed protein contains Pfam pr... 4666 0.0
At3g29375.1 68416.m03690 XH domain-containing protein conta... 68 4e-10
At3g22930.1 68416.m02889 calmodulin, putative strong simila... 48 3e-04
At4g28760.2 68417.m04113 expressed protein predicted protei... 46 0.001
At5g50020.1 68418.m06195 zinc finger (DHHC type) family pro... 44 0.005
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile: PF05064
Nsp1-like C-terminal region
Length = 2368
Score = 4666 bits (2354), Expect = 0.0
Identities = 2368/2370 (99%), Gaps = 2/2370 (0%)
Strand = Plus / Plus
Query: 3 agtgaagagaagagaagagaagagagaatcaatcaataacccgcaatgtcggggtttcca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgaagagaagagaagagaagagagaatcaatcaataacccgcaatgtcggggtttcca 60
Query: 63 tttggtcaatccaattccgttggaggattctcattcggatcttcttctgcaactaattcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttggtcaatccaattccgttggaggattctcattcggatcttcttctgcaactaattcc 120
Query: 123 tcttctgcttcatctaccacttctccgttatctttctcctttaaccaatcttcaaaccct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcttctgcttcatctaccacttctccgttatctttctcctttaaccaatcttcaaaccct 180
Query: 183 agctccaccggattcggtttcggatcctccgtatcatcaactcctgcttcctccactact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agctccaccggattcggtttcggatcctccgtatcatcaactcctgcttcctccactact 240
Query: 243 ccatcgtttggattcggagcttcctctactccttccttcggattcggttcttctgcttct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccatcgtttggattcggagcttcctctactccttccttcggattcggttcttctgcttct 300
Query: 303 tcatcgactccatcgttcggattcggatcttctgcctccgtgactcctgcttccacaact 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcatcgactccatcgttcggattcggatcttctgcctccgtgactcctgcttccacaact 360
Query: 363 ccatcgtttggatttggaaccgccgcttcttcatctgctcctgctccgtcgctgtttggt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccatcgtttggatttggaaccgccgcttcttcatctgctcctgctccgtcgctgtttggt 420
Query: 423 tcatctaccaccaatgcttcttcagctgctcctggttcttctcctttcggatttgtaact 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcatctaccaccaatgcttcttcagctgctcctggttcttctcctttcggatttgtaact 480
Query: 483 tcctcggcctcttccaccgcaactccatcgtcatctctatttggagctcccgcttcttcc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcctcggcctcttccaccgcaactccatcgtcatctctatttggagctcccgcttcttcc 540
Query: 543 gccgcaactccatcgtcatctccattcggagctgctccagccagtggttcaacacctctc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gccgcaactccatcgtcatctccattcggagctgctccagccagtggttcaacacctctc 600
Query: 603 tttggatcttccccttccttattctctgctccttcatctgcctccgcctctaattcttct 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttggatcttccccttccttattctctgctccttcatctgcctccgcctctaattcttct 660
Query: 663 ctcttcggagcatcctcatccgccgctacttcaacatctcctcttttcggcgcgccatca 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctcttcggagcatcctcatccgccgctacttcaacatctcctcttttcggcgcgccatca 720
Query: 723 tcagccaccggcgcaacaccgtcctttagcgtggcctcatcagcacctggctcctcatca 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcagccaccggcgcaacaccgtcctttagcgtggcctcatcagcacctggctcctcatca 780
Query: 783 tccatctttggagctaccggctcgtcaccttccttcagtgttgcctcatcagcctctggc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tccatctttggagctaccggctcgtcaccttccttcagtgttgcctcatcagcctctggc 840
Query: 843 tcctcaccgtcaatctttggagctaccggttcttcaccgttctttggttcgtcttcttca 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcctcaccgtcaatctttggagctaccggttcttcaccgttctttggttcgtcttcttca 900
Query: 903 gccggttcaactccgtctctctttgcatcttcctcgtcaggcgcaacaacttcttcacca 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gccggttcaactccgtctctctttgcatcttcctcgtcaggcgcaacaacttcttcacca 960
Query: 963 tccccgctttggagtatccaccttcaattcctcatctacatccaatacctcgaatgcctc 1022
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tccccg-tttggagtatccaccttcaattcctcatctacatccaatacctcgaatgcctc 1019
Query: 1023 agcttctccattctccgcttctaccgggttctctttcttgaaaagcactgcaagttcgac 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 agcttctccattctccgcttctaccgggttctctttcttgaaaagcactgcaagttcgac 1079
Query: 1083 caccagctccaccactccttctgctcctccacaaacggcttcatcttcgtcctccttctc 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 caccagctccaccactccttctgctcctccacaaacggcttcatcttcgtcctccttctc 1139
Query: 1143 atttggtacatccgccaattcaggttttaacctttcaaccggaagctccgcagcacctgc 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 atttggtacatccgccaattcaggttttaacctttcaaccggaagctccgcagcacctgc 1199
Query: 1203 atctagcacatccggagcagtgttttccattgcaaccaccactactacttcttcttcgac 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 atctagcacatccggagcagtgttttccattgcaaccaccactactacttcttcttcgac 1259
Query: 1263 tccggctgctactagtgcaccagcttcttcagctcccgcttctacaatggctttcccttc 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 tccggctgctactagtgcaccagcttcttcagctcccgcttctacaatggctttcccttc 1319
Query: 1323 ttttggtgtgacttcatctgcaaccaacaccactccggctagctccgctgctacattcag 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 ttttggtgtgacttcatctgcaaccaacaccactccggctagctccgctgctacattcag 1379
Query: 1383 tactacaggatttggtttggctagctcgactcctgccactggatctacgaactcttttac 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 tactacaggatttggtttggctagctcgactcctgccactggatctacgaactcttttac 1439
Query: 1443 tgggtttgctgtaccgaagacatcaacacctgcatcatcttcacaaccacaaactactag 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 tgggtttgctgtaccgaagacatcaacacctgcatcatcttcacaaccacaaactactag 1499
Query: 1503 tcctgcattctcattcagtctcccatcttcgacttctactactgctcctgctactagttc 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 tcctgcattctcattcagtctcccatcttcgacttctactactgctcctgctactagttc 1559
Query: 1563 tgctactacaacacagacaactcttgttgttccttcaagtagtgggacgagcacagctgt 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1560 tgctactacaacacagacaactcttgttgttccttcaagtagtgggacgagcacagctgt 1619
Query: 1623 tgctccagtggctggttctccaaagttgccatctgaaataactggcaaaactgttgagga 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 tgctccagtggctggttctccaaagttgccatctgaaataactggcaaaactgttgagga 1679
Query: 1683 gattatcaaggagtggaatactgagctacaagagcgcacaggggagattccggaaacagg 1742
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1680 gattatcaaggagtggaatactgagctacaagagcgcaca-gggagattccggaaacagg 1738
Query: 1743 caaatgcaatagcagagtgggataagcggatcttgcaaaaccgtgatgttcttttgagac 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 caaatgcaatagcagagtgggataagcggatcttgcaaaaccgtgatgttcttttgagac 1798
Query: 1803 ttgagattgaagttgcaaaagtggttgaaacccaatctagcttggaacgacagctggaat 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799 ttgagattgaagttgcaaaagtggttgaaacccaatctagcttggaacgacagctggaat 1858
Query: 1863 taatcgagactcatcagcaagaggttgacaaggctttgcaaagcatggaggaagaggctg 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1859 taatcgagactcatcagcaagaggttgacaaggctttgcaaagcatggaggaagaggctg 1918
Query: 1923 agcgtatatataatgacgagcggaaatcacttctggacgatgaagcagcatcaactagag 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1919 agcgtatatataatgacgagcggaaatcacttctggacgatgaagcagcatcaactagag 1978
Query: 1983 atgcaatgtatgaacagtctgagctagtagaaagagaactggagcatatgactgaacaaa 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1979 atgcaatgtatgaacagtctgagctagtagaaagagaactggagcatatgactgaacaaa 2038
Query: 2043 tcagatcgattatacaatccgtaaatgcaaaccagggtggagaacttgaagcgatagatg 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2039 tcagatcgattatacaatccgtaaatgcaaaccagggtggagaacttgaagcgatagatg 2098
Query: 2103 ggatgagtccacttgatgtagttgtcagaatcttgaacaatcaactcagttccttaatgt 2162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2099 ggatgagtccacttgatgtagttgtcagaatcttgaacaatcaactcagttccttaatgt 2158
Query: 2163 ggattgatgagaaagcagaggaattctcttctcggattcaaaaaatcgcattgcaaggtt 2222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2159 ggattgatgagaaagcagaggaattctcttctcggattcaaaaaatcgcattgcaaggtt 2218
Query: 2223 cgggtggagatcgtgaattgatggctccaaagcactggatgtcttgataagaattacaaa 2282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2219 cgggtggagatcgtgaattgatggctccaaagcactggatgtcttgataagaattacaaa 2278
Query: 2283 aaccacataatctcaggaaatggattatcttcttgtagttttcgtgttattttttctatg 2342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2279 aaccacataatctcaggaaatggattatcttcttgtagttttcgtgttattttttctatg 2338
Query: 2343 aaaaagaagagaggtctgattttaccataa 2372
||||||||||||||||||||||||||||||
Sbjct: 2339 aaaaagaagagaggtctgattttaccataa 2368
>At3g29375.1 68416.m03690 XH domain-containing protein contains Pfam profile:
PF03469: XH domain
Length = 1138
Score = 67.9 bits (34), Expect = 4e-10
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 1518 cagtctcccatcttcgacttctactactgctcctgctactagttctgctactacaacaca 1577
|||||| |||||||| |||| || ||| ||| |||||||||||||| ||||||||||||
Sbjct: 258 cagtcttccatcttctgcttcaaccactactcatgctactagttctgttactacaacaca 317
Query: 1578 gacaactcttgttgttccttcaagtagtgg 1607
| || |||||| ||| |||| ||||||||
Sbjct: 318 gccatctcttggtgtcgcttcgagtagtgg 347
Score = 52.0 bits (26), Expect = 2e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 843 tcctcaccgtcaatctttggagctaccggttcttcacc 880
||||||||||| ||||||||||| |||||||| |||||
Sbjct: 217 tcctcaccgtccatctttggagccaccggttcgtcacc 254
Score = 44.1 bits (22), Expect = 0.005
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 774 tcctcatcatccatctttggagctaccggctcgtcacc 811
|||||| | |||||||||||||| ||||| ||||||||
Sbjct: 217 tcctcaccgtccatctttggagccaccggttcgtcacc 254
Score = 40.1 bits (20), Expect = 0.084
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1635 tggttctccaaagttgccatctgaaataactg 1666
||||||||| || ||||||||||||||||||
Sbjct: 357 tggttctccgaatatgccatctgaaataactg 388
>At3g22930.1 68416.m02889 calmodulin, putative strong similarity to calmodulin
8 GI:5825600 from [Arabidopsis thaliana]; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 821
Score = 48.1 bits (24), Expect = 3e-04
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 gaagagaagagaagagaagagaga 29
||||||||||||||||||||||||
Sbjct: 44 gaagagaagagaagagaagagaga 21
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gaagagaagagaagagaagaga 27
||||||||||||||||||||||
Sbjct: 49 gaagagaagagaagagaagaga 28
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gaagagaagagaagagaagaga 27
||||||||||||||||||||||
Sbjct: 54 gaagagaagagaagagaagaga 33
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 aagagaagagaagagaagaga 27
|||||||||||||||||||||
Sbjct: 58 aagagaagagaagagaagaga 38
>At4g28760.2 68417.m04113 expressed protein predicted protein. Arabidopsis
thaliana
Length = 3390
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gaagagaagagaagagaagagag 28
|||||||||||||||||||||||
Sbjct: 25 gaagagaagagaagagaagagag 47
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9 gagaagagaagagaagaga 27
|||||||||||||||||||
Sbjct: 23 gagaagagaagagaagaga 41
>At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein contains Pfam
profile PF01529: DHHC zinc finger domain
Length = 1785
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gaagagaagagaagagaagaga 27
||||||||||||||||||||||
Sbjct: 38 gaagagaagagaagagaagaga 59
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gaagagaagagaagagaagaga 27
||||||||||||||||||||||
Sbjct: 28 gaagagaagagaagagaagaga 49
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gaagagaagagaagagaagaga 27
||||||||||||||||||||||
Sbjct: 33 gaagagaagagaagagaagaga 54
Score = 44.1 bits (22), Expect = 0.005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gaagagaagagaagagaagaga 27
||||||||||||||||||||||
Sbjct: 23 gaagagaagagaagagaagaga 44
Score = 40.1 bits (20), Expect = 0.084
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 agagaagagaagagaagaga 27
||||||||||||||||||||
Sbjct: 20 agagaagagaagagaagaga 39
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 102,931
Number of Sequences: 29161
Number of extensions: 102931
Number of successful extensions: 3135
Number of sequences better than 10.0: 114
length of query: 2372
length of database: 44,058,232
effective HSP length: 19
effective length of query: 2353
effective length of database: 43,504,173
effective search space: 102365319069
effective search space used: 102365319069
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)