BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.12.cl.1206.Contig1
(2070 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05545.1 68416.m00609 transcription factor, putative / z... 2573 0.0
At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finge... 52 2e-05
At5g52160.1 68418.m06475 protease inhibitor/seed storage/li... 42 0.019
At2g31500.1 68415.m03848 calcium-dependent protein kinase, ... 42 0.019
At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-... 42 0.019
>At3g05545.1 68416.m00609 transcription factor, putative / zinc finger (C3HC4 type
RING finger) family protein similar to VIP2 protein
[Avena fatua] gi|6996144|emb|CAB75506; contains Pfam
domain PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1668
Score = 2573 bits (1298), Expect = 0.0
Identities = 1304/1306 (99%)
Strand = Plus / Plus
Query: 765 gtcttttggagttcactggtgcccatttggaagctcagcccgtcttccttctttcgagga 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtcttttggagttcactggtgcccatttggaagctcagcccgtcttccttctttcgagga 422
Query: 825 tggagaattttcaccgagttcatatcacgatcttttgggacagcaaggttactatactga 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tggagaattttcaccgagttcatatcacgatcttttgggacagcaaggttactatactga 482
Query: 885 accagcagcgccaaccgcaggtcatccatgtccatatgtaacctattttggcccggttca 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 accagcagcgccaaccgcaggtcatccatgtccatatgtaacctattttggcccggttca 542
Query: 945 ctcgccttcctcaagcagtggtggtgctgcaggcgtttcagacagttcaagtttcagtag 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctcgccttcctcaagcagtggtggtgctgcaggcgtttcagacagttcaagtttcagtag 602
Query: 1005 tcactggaacactggctcttcggtttctggtgaagtcccaactccttatggtttccctgt 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tcactggaacactggctcttcggtttctggtgaagtcccaactccttatggtttccctgt 662
Query: 1065 ggatccgcactatcacggctgggattatcatccgcctccacccccaccgccacagcattt 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggatccgcactatcacggctgggattatcatccgcctccacccccaccgccacagcattt 722
Query: 1125 ctctgcttctggcgctcatgtgggcaggccaactcagcccacgccgccaccagccgctgc 1184
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 723 ctctgcttctggcgctcatgtgggcagtccaactcagcccacgcctccaccagccgctgc 782
Query: 1185 gaggacttctcgagccaacggctcagatatgatcagacccagaccgccacatttcacgcg 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gaggacttctcgagccaacggctcagatatgatcagacccagaccgccacatttcacgcg 842
Query: 1245 tccatttcatggtcacagttccagtggtagagcgggtagctcggtggcatctgttccgag 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tccatttcatggtcacagttccagtggtagagcgggtagctcggtggcatctgttccgag 902
Query: 1305 gacaccaccatttccaggaagcaacgctcggacccgagacagaatgcaggctcttcaagc 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gacaccaccatttccaggaagcaacgctcggacccgagacagaatgcaggctcttcaagc 962
Query: 1365 ctattaccaacagtcttctgcacagtcacaccagccggattcgcctatagtctctcgagg 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ctattaccaacagtcttctgcacagtcacaccagccggattcgcctatagtctctcgagg 1022
Query: 1425 gcctgtattcccatctggccggaggcccgctagaggaatagcttcagggatgggatcaac 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 gcctgtattcccatctggccggaggcccgctagaggaatagcttcagggatgggatcaac 1082
Query: 1485 gtcatcttcttcagatcaggcaggtgggagtggttttatccggtttaacatatgggagag 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 gtcatcttcttcagatcaggcaggtgggagtggttttatccggtttaacatatgggagag 1142
Query: 1545 agatccttatatgcaatcacaacaagcctactcggttaatcagatggacagagaaccaaa 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 agatccttatatgcaatcacaacaagcctactcggttaatcagatggacagagaaccaaa 1202
Query: 1605 catttggacatcttcatttaatgaaggatcaggaagcttccatcagaggcacggtggcgg 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 catttggacatcttcatttaatgaaggatcaggaagcttccatcagaggcacggtggcgg 1262
Query: 1665 aggaggatcatcttaagaactgagtcagtacccgttcgagattctcaccggtcgggcaat 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 aggaggatcatcttaagaactgagtcagtacccgttcgagattctcaccggtcgggcaat 1322
Query: 1725 tctcatgatggacaaaaaaccaaaaaaagaaaaaaaaaacattgggaatttgatatttga 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 tctcatgatggacaaaaaaccaaaaaaagaaaaaaaaaacattgggaatttgatatttga 1382
Query: 1785 gaaaacctgaaaaactgcatgctcaagttatgtgatgaattgataatctaaaaacacaaa 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 gaaaacctgaaaaactgcatgctcaagttatgtgatgaattgataatctaaaaacacaaa 1442
Query: 1845 atggtatgtaatggtttggagagagactgcctcccccagtcggtggtgtgacccccgtgc 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 atggtatgtaatggtttggagagagactgcctcccccagtcggtggtgtgacccccgtgc 1502
Query: 1905 ggttcgaggtctgggtatgaatcgggggagcgaaagaggtctttgggtatttgtttttta 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 ggttcgaggtctgggtatgaatcgggggagcgaaagaggtctttgggtatttgtttttta 1562
Query: 1965 atgtggcgacattgggtatccaagttattaccctaatgaaactttctttcttctatctgg 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 atgtggcgacattgggtatccaagttattaccctaatgaaactttctttcttctatctgg 1622
Query: 2025 ttatgttaaattttaactgtcgagtttttcttcatattactatccc 2070
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1623 ttatgttaaattttaactgtcgagtttttcttcatattactatccc 1668
Score = 720 bits (363), Expect = 0.0
Identities = 363/363 (100%)
Strand = Plus / Plus
Query: 230 atgggtttaggcaataagggtaacaaattcaatttcggcgataatgatctcgccgacgaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgggtttaggcaataagggtaacaaattcaatttcggcgataatgatctcgccgacgaa 60
Query: 290 gctagtggtgccgatggcgacgaaggtgatggttttggttcggttgcgtgttcgatttgt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctagtggtgccgatggcgacgaaggtgatggttttggttcggttgcgtgttcgatttgt 120
Query: 350 ctcgagacggttgttaaaaacggcgatcgagcatgggctaatcttcaatgtgaccatcag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcgagacggttgttaaaaacggcgatcgagcatgggctaatcttcaatgtgaccatcag 180
Query: 410 ttccatctagattgtattggttcggctttcaatgcaaagggagtgatgcaatgccccaac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttccatctagattgtattggttcggctttcaatgcaaagggagtgatgcaatgccccaac 240
Query: 470 tgtcggaaagtagaaaaaggccagtggctttatgcaaacggttgtcgttcatatcccgaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtcggaaagtagaaaaaggccagtggctttatgcaaacggttgtcgttcatatcccgaa 300
Query: 530 ttcaatgtcgaggattgggttcacgaagaagatatttatgatattggagcatactctgaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcaatgtcgaggattgggttcacgaagaagatatttatgatattggagcatactctgaa 360
Query: 590 atg 592
|||
Sbjct: 361 atg 363
>At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4
type(RING finger)
Length = 1502
Score = 52.0 bits (26), Expect = 2e-05
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 455 atgcaatgccccaactgtcggaaagtagaaaaaggccagtggctttatgcaaacggtt 512
||||||||||| |||||||| || || ||||| || |||||| | |||||||||||||
Sbjct: 462 atgcaatgccctaactgtcgcaatgtcgaaaagggtcagtggttgtatgcaaacggtt 519
>At5g52160.1 68418.m06475 protease inhibitor/seed storage/lipid transfer protein
(LTP) family protein contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 619
Score = 42.1 bits (21), Expect = 0.019
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1739 aaaaaccaaaaaaagaaaaaaaaaa 1763
|||||||||||||| ||||||||||
Sbjct: 514 aaaaaccaaaaaaaaaaaaaaaaaa 490
>At2g31500.1 68415.m03848 calcium-dependent protein kinase, putative / CDPK,
putative similar to calcium-dependent protein kinase
[Arabidopsis thaliana] gi|836942|gb|AAA67655; contains
protein kinase domain, Pfam:PF00069; contains EF hand
domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 2213
Score = 42.1 bits (21), Expect = 0.019
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1738 aaaaaaccaaaaaaagaaaaaaaaa 1762
||||||||||||||| |||||||||
Sbjct: 67 aaaaaaccaaaaaaaaaaaaaaaaa 91
>At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1 protein [Petunia x
hybrida] GI:6093215, B-type cyclin [Nicotiana tabacum]
GI:849074; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 1608
Score = 42.1 bits (21), Expect = 0.019
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1739 aaaaaccaaaaaaagaaaaaa 1759
|||||||||||||||||||||
Sbjct: 1475 aaaaaccaaaaaaagaaaaaa 1455
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,958
Number of Sequences: 29161
Number of extensions: 80958
Number of successful extensions: 2573
Number of sequences better than 10.0: 160
length of query: 2070
length of database: 44,058,232
effective HSP length: 18
effective length of query: 2052
effective length of database: 43,533,334
effective search space: 89330401368
effective search space used: 89330401368
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)