BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.11.cl.1144.Contig1
(2395 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finge... 4746 0.0
At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finge... 48 3e-04
At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finge... 48 3e-04
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finge... 48 3e-04
At1g54710.1 68414.m06237 expressed protein contains 3 WD-40... 40 0.085
>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profiles PF00097: Zinc finger, C3HC4 type
(RING finger), PF00092: von Willebrand factor type A
domain
Length = 2394
Score = 4746 bits (2394), Expect = 0.0
Identities = 2394/2394 (100%)
Strand = Plus / Plus
Query: 2 aaaactttctccatcttgaaaaccaaaacaacccaagattaataatatacaccaatgggt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaactttctccatcttgaaaaccaaaacaacccaagattaataatatacaccaatgggt 60
Query: 62 actggttggcgacgagccttttgcaccaccgcccctagaaacagcgatgccgcggcgccg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actggttggcgacgagccttttgcaccaccgcccctagaaacagcgatgccgcggcgccg 120
Query: 122 gatctcgacaagcaacgcaccggctataatcttaccccaagtcctagcccaagaagctgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatctcgacaagcaacgcaccggctataatcttaccccaagtcctagcccaagaagctgc 180
Query: 182 gttaagctagcttttctatccggaggaagtaatccttcaactccccgatcaacttctagt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttaagctagcttttctatccggaggaagtaatccttcaactccccgatcaacttctagt 240
Query: 242 cctagcctacgttgtcggactgcagatgctcaaactcccacggcggaacaaacttcgacg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctagcctacgttgtcggactgcagatgctcaaactcccacggcggaacaaacttcgacg 300
Query: 302 ccaagatcggcgactaagagtccaagactgtctttggccgctatctctaacccttcttcg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccaagatcggcgactaagagtccaagactgtctttggccgctatctctaacccttcttcg 360
Query: 362 cctcggtcaccgttaaaactctctctgtttcgcaacagcttcaaattcagaagtacttgt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctcggtcaccgttaaaactctctctgtttcgcaacagcttcaaattcagaagtacttgt 420
Query: 422 ggaatatgtttgaacagtgtgaaaacagggcaaggaacggcgaagtatacggccgagtgt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaatatgtttgaacagtgtgaaaacagggcaaggaacggcgaagtatacggccgagtgt 480
Query: 482 tcacacgcatttcatttcccttgtattgccgactatgttcgtaaacagggcaagcttgtt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcacacgcatttcatttcccttgtattgccgactatgttcgtaaacagggcaagcttgtt 540
Query: 542 tgtcctgtttgtaattccatctggaaagacgcttctctccttgttcctcataagaatgca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgtcctgtttgtaattccatctggaaagacgcttctctccttgttcctcataagaatgca 600
Query: 602 actgaatctcccctggacgactctgtttccgtaatccaggagaagcgcgttgttgtcacg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actgaatctcccctggacgactctgtttccgtaatccaggagaagcgcgttgttgtcacg 660
Query: 662 tcttctcccagagcaaaaccaaggccaaagcagagtgattattcgagattttacgacgat 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcttctcccagagcaaaaccaaggccaaagcagagtgattattcgagattttacgacgat 720
Query: 722 gatgagcctttgctttcgccgaggtttgtcactatacctgaagctgatgagaattgtgga 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gatgagcctttgctttcgccgaggtttgtcactatacctgaagctgatgagaattgtgga 780
Query: 782 ggggaagaggaggatgacgtgcctcagttcaagggatttgtggtggatccgaacccttct 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggggaagaggaggatgacgtgcctcagttcaagggatttgtggtggatccgaacccttct 840
Query: 842 tttgctgtcaaaactaatgagattccggtcaatggtcgagattttggaaacgttcaggtg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tttgctgtcaaaactaatgagattccggtcaatggtcgagattttggaaacgttcaggtg 900
Query: 902 agtttgttgcctgaagcggcggttgtctctgttgggtgtggttacgagactcgtgcagtg 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 agtttgttgcctgaagcggcggttgtctctgttgggtgtggttacgagactcgtgcagtg 960
Query: 962 gctttgcgggtgaaggcgccaccacctctaacagcaagaggcggtgtagggcgtaggctt 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gctttgcgggtgaaggcgccaccacctctaacagcaagaggcggtgtagggcgtaggctt 1020
Query: 1022 ttagatccgtcgcagcgtgcaccggtggacttggtggttgtagttgacgtaggtggaaca 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ttagatccgtcgcagcgtgcaccggtggacttggtggttgtagttgacgtaggtggaaca 1080
Query: 1082 atgaacggtgcgaaactacaaatggtcaaacgagccatgaggcttgtgatctcctcgctt 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 atgaacggtgcgaaactacaaatggtcaaacgagccatgaggcttgtgatctcctcgctt 1140
Query: 1142 ggctcagctgatcggctatctatcgttgccgtcgtcatgacggttcccaagagactcctt 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ggctcagctgatcggctatctatcgttgccgtcgtcatgacggttcccaagagactcctt 1200
Query: 1202 ccgctgaagagaatgaccgaacacggcaaacgctctgctggagccgtggtagatgggttg 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ccgctgaagagaatgaccgaacacggcaaacgctctgctggagccgtggtagatgggttg 1260
Query: 1262 ctttgtggtcaaggttctaacacaagtgaggcattaaaaaaagcatcaagagtgcttgaa 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ctttgtggtcaaggttctaacacaagtgaggcattaaaaaaagcatcaagagtgcttgaa 1320
Query: 1322 gatcgtagggagagaaacccggtggctagcatcgtactcctaacggacggtcagggccag 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 gatcgtagggagagaaacccggtggctagcatcgtactcctaacggacggtcagggccag 1380
Query: 1382 ttgagtaaagtccacacaaatcaacggtcaacaataactaacgtgggatcaacacgtttt 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ttgagtaaagtccacacaaatcaacggtcaacaataactaacgtgggatcaacacgtttt 1440
Query: 1442 gctcacattgagatccctgttactgagcatggcttcggagaaagcggtggatgtagtaac 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 gctcacattgagatccctgttactgagcatggcttcggagaaagcggtggatgtagtaac 1500
Query: 1502 gcccctgcagaggaagcttttgcaaaatgcataggaggattgcttagcgtagtggttcaa 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gcccctgcagaggaagcttttgcaaaatgcataggaggattgcttagcgtagtggttcaa 1560
Query: 1562 gatctcaggatccaaatccgggttggatcaggatctggaccatgtgaaatctcagccatt 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 gatctcaggatccaaatccgggttggatcaggatctggaccatgtgaaatctcagccatt 1620
Query: 1622 tatctatgtaatggacggcctactttggttagttccggttccgggtcagtccggcttggg 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 tatctatgtaatggacggcctactttggttagttccggttccgggtcagtccggcttggg 1680
Query: 1682 gacctctacgcaggagaggaaagagagcttctagttgagcttagggtcccgtcaaccgcc 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 gacctctacgcaggagaggaaagagagcttctagttgagcttagggtcccgtcaaccgcc 1740
Query: 1742 actagggcctaccagattttgtcagttagaggtctctttaaggacccatcgacacaagaa 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 actagggcctaccagattttgtcagttagaggtctctttaaggacccatcgacacaagaa 1800
Query: 1802 gttgtatatggacgagaccaatctctccgcgttcctcaagccgttcgatcatcttcttct 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 gttgtatatggacgagaccaatctctccgcgttcctcaagccgttcgatcatcttcttct 1860
Query: 1862 cctagaatcgaacggcttagaagcctctttatagcgactcgggctgttgccgagtcgcgg 1921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 cctagaatcgaacggcttagaagcctctttatagcgactcgggctgttgccgagtcgcgg 1920
Query: 1922 aggctagtggaatacggagaatgcacaagcgcataccacttgctaacatcagcgcgtgcg 1981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 aggctagtggaatacggagaatgcacaagcgcataccacttgctaacatcagcgcgtgcg 1980
Query: 1982 ttgcttggccagtcgggaacggtggaagcggctgagtacataaaggtcgtggaggcagag 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 ttgcttggccagtcgggaacggtggaagcggctgagtacataaaggtcgtggaggcagag 2040
Query: 2042 ctggtggaagttcaatggagaggacaacaactaatggagtatcaaagtcagcaccagcag 2101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 ctggtggaagttcaatggagaggacaacaactaatggagtatcaaagtcagcaccagcag 2100
Query: 2102 caacataatcaacggcggagaggaagcgagagagagaccacgacgacgatgacgttgatg 2161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 caacataatcaacggcggagaggaagcgagagagagaccacgacgacgatgacgttgatg 2160
Query: 2162 gatgaaaacggtgagccgttgactccagcatcagcgtggagagcggctgagaaactggct 2221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 gatgaaaacggtgagccgttgactccagcatcagcgtggagagcggctgagaaactggct 2220
Query: 2222 aagttagctatgatgaagaagagcgacttgcacggcttcgaaaacgctagattttaaatg 2281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 aagttagctatgatgaagaagagcgacttgcacggcttcgaaaacgctagattttaaatg 2280
Query: 2282 ttattttttttgtttcgtccagaaatatgaataatttttaattctgacaatacaaaggaa 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 ttattttttttgtttcgtccagaaatatgaataatttttaattctgacaatacaaaggaa 2340
Query: 2342 aatgtgtagtcgtcagagagtgtcataatagcaggcggcaaattacttttaatt 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2341 aatgtgtagtcgtcagagagtgtcataatagcaggcggcaaattacttttaatt 2394
>At4g37890.2 68417.m05359 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profiles PF00097: Zinc finger, C3HC4 type
(RING finger), PF00092: von Willebrand factor type A
domain
Length = 2276
Score = 48.1 bits (24), Expect = 3e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 2192 tcagcgtggagagcggctgagaaactggctaa 2223
|||||||||||||||||||||| | |||||||
Sbjct: 2099 tcagcgtggagagcggctgagagattggctaa 2130
>At4g37890.1 68417.m05358 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profiles PF00097: Zinc finger, C3HC4 type
(RING finger), PF00092: von Willebrand factor type A
domain
Length = 2349
Score = 48.1 bits (24), Expect = 3e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 2192 tcagcgtggagagcggctgagaaactggctaa 2223
|||||||||||||||||||||| | |||||||
Sbjct: 2172 tcagcgtggagagcggctgagagattggctaa 2203
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profiles PF00097: Zinc finger, C3HC4 type
(RING finger), PF00092: von Willebrand factor type A
domain
Length = 2279
Score = 48.1 bits (24), Expect = 3e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 2246 gacttgcacggcttcgaaaacgctagatttta 2277
|||||||| || ||||||||||||||||||||
Sbjct: 2140 gacttgcatggtttcgaaaacgctagatttta 2171
>At1g54710.1 68414.m06237 expressed protein contains 3 WD-40 repeats (PF00400) (1
weak) submitForm();
Length = 3335
Score = 40.1 bits (20), Expect = 0.085
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2271 gattttaaatgttatttttt 2290
||||||||||||||||||||
Sbjct: 3207 gattttaaatgttatttttt 3188
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,306
Number of Sequences: 29161
Number of extensions: 70306
Number of successful extensions: 1693
Number of sequences better than 10.0: 39
length of query: 2395
length of database: 44,058,232
effective HSP length: 19
effective length of query: 2376
effective length of database: 43,504,173
effective search space: 103365915048
effective search space used: 103365915048
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)