BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.11.cl.1123.Contig1
(563 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32410.1 68417.m04614 cellulose synthase, catalytic subu... 959 0.0
At2g25540.1 68415.m03057 cellulose synthase, catalytic subu... 42 0.005
At5g02600.1 68418.m00196 heavy-metal-associated domain-cont... 36 0.31
At1g17560.1 68414.m02163 ribosomal protein L14 family prote... 36 0.31
At1g01220.1 68414.m00036 GHMP kinase-related contains simil... 36 0.31
>At4g32410.1 68417.m04614 cellulose synthase, catalytic subunit, putative similar
to cellulose synthase-1 [gi:9622874] and -2 [gi:9622876]
from Zea mays
Length = 3912
Score = 959 bits (484), Expect = 0.0
Identities = 484/484 (100%)
Strand = Plus / Plus
Query: 80 cctccatcttctcgttgctttgggtcaggatcaatccctttgtggacgccaatcccaatg 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3429 cctccatcttctcgttgctttgggtcaggatcaatccctttgtggacgccaatcccaatg 3488
Query: 140 ccaacaacttcaatggcaaaggaggtgtcttttagaccctatttatatacttgtgtgtgc 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3489 ccaacaacttcaatggcaaaggaggtgtcttttagaccctatttatatacttgtgtgtgc 3548
Query: 200 atatatcaaaaacgcgcaatgggaattccaaatcatctaaacccatcaaaccccagtgaa 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3549 atatatcaaaaacgcgcaatgggaattccaaatcatctaaacccatcaaaccccagtgaa 3608
Query: 260 ccgggcagttaaggtgattccatgtccaagattagctttctccgagtagccagagaaggt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3609 ccgggcagttaaggtgattccatgtccaagattagctttctccgagtagccagagaaggt 3668
Query: 320 gaaattgttcgtaacactattgtaatgattttccagtggggaagaagatgtggacccaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3669 gaaattgttcgtaacactattgtaatgattttccagtggggaagaagatgtggacccaaa 3728
Query: 380 tgatacatagtctacaaaaagaatttgttattctttcttatatttattttatttaaagct 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3729 tgatacatagtctacaaaaagaatttgttattctttcttatatttattttatttaaagct 3788
Query: 440 tgttagactcacacttatgtaatgttggaacttgttgtcctaaaaagggattggagtttt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3789 tgttagactcacacttatgtaatgttggaacttgttgtcctaaaaagggattggagtttt 3848
Query: 500 ctttttatctaagaatctgaagtttatatgctaagcttttcactttactacaaaaagttt 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3849 ctttttatctaagaatctgaagtttatatgctaagcttttcactttactacaaaaagttt 3908
Query: 560 atgg 563
||||
Sbjct: 3909 atgg 3912
>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, putative similar
to cellulose synthase-1 [gi:9622874] and -2 [gi:9622876]
from Zea mays
Length = 3446
Score = 42.1 bits (21), Expect = 0.005
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 82 tccatcttctcgttgctttgggtcaggatcaatccctttgt 122
||||||||||| || ||||||||| | ||||| ||||||||
Sbjct: 3115 tccatcttctcattactttgggtccgaatcaacccctttgt 3155
>At5g02600.1 68418.m00196 heavy-metal-associated domain-containing protein low
similarity to gi:3168840 copper homeostasis factor;
contains Pfam heavy-metal-associated domain PF00403;
predicted proteins, Arabidopsis thaliana
Length = 1613
Score = 36.2 bits (18), Expect = 0.31
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 404 ttgttattctttcttatattta 425
||||||||||||||| ||||||
Sbjct: 1442 ttgttattctttcttttattta 1463
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein similar to
GB:Z98756 from (Mycobacterium leprae)
Length = 880
Score = 36.2 bits (18), Expect = 0.31
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 136 aatgccaacaacttcaatggca 157
||||||||||||| ||||||||
Sbjct: 556 aatgccaacaactacaatggca 535
>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to L-fucose
kinase [Homo sapiens] gi|21212956|emb|CAD29647
Length = 3168
Score = 36.2 bits (18), Expect = 0.31
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 231 atcatctaaacccatcaa 248
||||||||||||||||||
Sbjct: 1632 atcatctaaacccatcaa 1615
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,474
Number of Sequences: 29161
Number of extensions: 18474
Number of successful extensions: 1406
Number of sequences better than 10.0: 44
length of query: 563
length of database: 44,058,232
effective HSP length: 17
effective length of query: 546
effective length of database: 43,562,495
effective search space: 23785122270
effective search space used: 23785122270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)