BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.10.cl.1091.Contig1
(1698 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g45201.2 68414.m05185 lipase class 3 family protein Sinc... 3364 0.0
At5g42930.1 68418.m05234 lipase class 3 family protein low ... 58 3e-07
At1g56630.1 68414.m06513 lipase class 3 family protein cont... 42 0.015
At5g15210.1 68418.m01782 zinc finger homeobox family protei... 38 0.24
At4g08113.1 68417.m01331 myosin heavy chain-related similar... 36 0.94
>At1g45201.2 68414.m05185 lipase class 3 family protein Since this genomic
sequence region is unfinished, the annotated gene may be
missing a stop codon or start codon
Length = 1697
Score = 3364 bits (1697), Expect = 0.0
Identities = 1697/1697 (100%)
Strand = Plus / Plus
Query: 1 acaaatcaaccatttctcctttcttcttatttctgagcaaagttttttcttcctttcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acaaatcaaccatttctcctttcttcttatttctgagcaaagttttttcttcctttcata 60
Query: 61 ttgtgaggatgtccaaaaccaatatgaaattttgcaatagttattttctggtcgatccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgtgaggatgtccaaaaccaatatgaaattttgcaatagttattttctggtcgatccga 120
Query: 121 ccaaagcaagttttcttgatctccttttgcttttgttttcctccaacctgaccagtgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaaagcaagttttcttgatctccttttgcttttgttttcctccaacctgaccagtgcaa 180
Query: 181 gattcatcgattctcctccggatacgcttaaaggcttccggagaagtttcgcgagtcgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gattcatcgattctcctccggatacgcttaaaggcttccggagaagtttcgcgagtcgat 240
Query: 241 ggatccttgcgttggccatcttccttcaaaaagtattaatgctcttaagtaaaccttttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggatccttgcgttggccatcttccttcaaaaagtattaatgctcttaagtaaaccttttg 300
Query: 301 cattcattggtcaaaagctcacatattggctcaaccttcttacggcaaatggaggcttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cattcattggtcaaaagctcacatattggctcaaccttcttacggcaaatggaggcttct 360
Query: 361 tcaacttgatacttaaccttatgtcaggaaagctggtcaagcctgacaaatcttcggcga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaacttgatacttaaccttatgtcaggaaagctggtcaagcctgacaaatcttcggcga 420
Query: 421 cgtatacttcttttataggatgctcagatcgacgaatagagcttgacgagaagataaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgtatacttcttttataggatgctcagatcgacgaatagagcttgacgagaagataaatg 480
Query: 481 ttggtagcatcgaatacaaatcgatgttgtcaataatggcttctaagatctcttatgaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttggtagcatcgaatacaaatcgatgttgtcaataatggcttctaagatctcttatgaga 540
Query: 541 gcaaaccttacatcacttccgtcgtcaaaaacacttggaagatggacttggtgggtaact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcaaaccttacatcacttccgtcgtcaaaaacacttggaagatggacttggtgggtaact 600
Query: 601 acgacttttacaacgctttccaagaaagtaaattgacgcaagccttcgtgttcaagactt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acgacttttacaacgctttccaagaaagtaaattgacgcaagccttcgtgttcaagactt 660
Query: 661 cgagcaccaatccagacctcatcgtcgttagcttcagaggaaccgaacctttcgaggctg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cgagcaccaatccagacctcatcgtcgttagcttcagaggaaccgaacctttcgaggctg 720
Query: 721 ccgattggtgcactgatctcgacctctcttggtacgagatgaagaacgttggcaaagtcc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccgattggtgcactgatctcgacctctcttggtacgagatgaagaacgttggcaaagtcc 780
Query: 781 acgccgggttctcaagagctttaggtctccaaaaagatggatggcccaaggaaaatatta 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 acgccgggttctcaagagctttaggtctccaaaaagatggatggcccaaggaaaatatta 840
Query: 841 gtctactacaccaatatgcttactacaccatcagacagatgcttagagacaagcttggca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gtctactacaccaatatgcttactacaccatcagacagatgcttagagacaagcttggca 900
Query: 901 gaaacaagaaccttaaatatattctaacaggtcacagccttggcggagcactagctgctc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaaacaagaaccttaaatatattctaacaggtcacagccttggcggagcactagctgctc 960
Query: 961 ttttcccggcgattctggccattcacggtgaggatgagctgctagataagctagagggaa 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ttttcccggcgattctggccattcacggtgaggatgagctgctagataagctagagggaa 1020
Query: 1021 tctatacgtttggacagccacgtgtaggagatgaggactttggtgagtttatgaagggtg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tctatacgtttggacagccacgtgtaggagatgaggactttggtgagtttatgaagggtg 1080
Query: 1081 tggtgaaaaagcatggaatagagtatgagagattcgtctataacaatgatgttgtgccta 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tggtgaaaaagcatggaatagagtatgagagattcgtctataacaatgatgttgtgccta 1140
Query: 1141 gagtgccctttgatgacaagtacttattctcatacaagcactatggaccttgcaattcct 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gagtgccctttgatgacaagtacttattctcatacaagcactatggaccttgcaattcct 1200
Query: 1201 tcaacagtctctacaaaggaaaggtaagagaagatgcaccaaatgcgaactacttcaact 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 tcaacagtctctacaaaggaaaggtaagagaagatgcaccaaatgcgaactacttcaact 1260
Query: 1261 tgttgtggttaataccgcagctgttgactggtttgtgggagtttataaggagtttcatat 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 tgttgtggttaataccgcagctgttgactggtttgtgggagtttataaggagtttcatat 1320
Query: 1321 tacagttttggaaaggcgacgagtacaaagagaattggttaatgagatttgttagggttg 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tacagttttggaaaggcgacgagtacaaagagaattggttaatgagatttgttagggttg 1380
Query: 1381 tgggaatagtgttccctggtggctctaaccatttcccatttgattacgtcaactctactc 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tgggaatagtgttccctggtggctctaaccatttcccatttgattacgtcaactctactc 1440
Query: 1441 gcctaggaggcttggttcgacctcctcctactactactcctgaggataaacttgccctca 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 gcctaggaggcttggttcgacctcctcctactactactcctgaggataaacttgccctca 1500
Query: 1501 ttgcttgaactctcattatttaataatcatatccactttatctgccctaatgacggttaa 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 ttgcttgaactctcattatttaataatcatatccactttatctgccctaatgacggttaa 1560
Query: 1561 ataattgcacttgagctttaatgtattctctgtgttatgtgtttttgtatgtgagttttt 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 ataattgcacttgagctttaatgtattctctgtgttatgtgtttttgtatgtgagttttt 1620
Query: 1621 atgttggtaacaatatctaccttttcttatcttctgagttaaccagctacaaaatattcc 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 atgttggtaacaatatctaccttttcttatcttctgagttaaccagctacaaaatattcc 1680
Query: 1681 tcctggcttatatacac 1697
|||||||||||||||||
Sbjct: 1681 tcctggcttatatacac 1697
>At5g42930.1 68418.m05234 lipase class 3 family protein low similarity to
Triacylglycerol Acylhydrolase (E.C.3.1.1.3) [Rhizomucor
miehei] GI:230348; contains Pfam profile PF01764: Lipase
Length = 714
Score = 58.0 bits (29), Expect = 3e-07
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 670 atccagacctcatcgtcgttagcttcagaggaaccgaacctttcgaggctgccgattggt 729
||||| |||||||| ||||||| |||||||| || || |||||||| || | |||||||
Sbjct: 113 atccaaacctcatcatcgttagtttcagaggcactgatcctttcgatgccgatgattggt 172
Query: 730 gcactgatctcgacctctcttggtacgag 758
| || || || || |||||||||||||||
Sbjct: 173 gtacagacctggatctctcttggtacgag 201
Score = 38.2 bits (19), Expect = 0.24
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 1029 tttggacagccacgtgtaggagatgaggactttgg 1063
|||||||||||||| ||||| || ||||| |||||
Sbjct: 487 tttggacagccacgcgtaggcgacgaggagtttgg 521
>At1g56630.1 68414.m06513 lipase class 3 family protein contains Pfam profile
PF01764: Lipase
Length = 1095
Score = 42.1 bits (21), Expect = 0.015
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1294 tgtgggagtttataaggagtttcat 1318
|||||||||| ||||||||||||||
Sbjct: 866 tgtgggagttgataaggagtttcat 890
Score = 38.2 bits (19), Expect = 0.24
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1204 acagtctctacaaaggaaaggta 1226
||||| |||||||||||||||||
Sbjct: 776 acagtttctacaaaggaaaggta 798
Score = 36.2 bits (18), Expect = 0.94
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 676 acctcatcgtcgttagcttcagaggaaccgaacctttc 713
|||| |||||||| || || ||||||||||| ||||||
Sbjct: 365 accttatcgtcgtcagttttagaggaaccgatcctttc 402
>At5g15210.1 68418.m01782 zinc finger homeobox family protein / ZF-HD homeobox
family protein various predicted proteins, Arabidopsis
thaliana
Length = 1429
Score = 38.2 bits (19), Expect = 0.24
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1462 ctcctcctactactactcc 1480
|||||||||||||||||||
Sbjct: 1078 ctcctcctactactactcc 1060
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to Myosin heavy
chain, skeletal muscle, extraocular (MyHC-eo)
(SP:Q9UKX3) {Homo sapiens}
Length = 2295
Score = 36.2 bits (18), Expect = 0.94
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 639 caagccttcgtgttcaag 656
||||||||||||||||||
Sbjct: 887 caagccttcgtgttcaag 904
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,776
Number of Sequences: 29161
Number of extensions: 52776
Number of successful extensions: 1217
Number of sequences better than 10.0: 29
length of query: 1698
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1680
effective length of database: 43,533,334
effective search space: 73136001120
effective search space used: 73136001120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)