BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.10.cl.1014.Contig1
(1294 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosy... 2557 0.0
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /... 759 0.0
At1g24625.1 68414.m03099 zinc finger (C2H2 type) family pro... 44 0.003
At5g01380.1 68418.m00051 expressed protein 40 0.046
At3g12710.1 68416.m01588 methyladenine glycosylase family p... 40 0.046
>At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-homocysteine
hydrolase / AdoHcyase (SAHH) identical to SP|O23255
Adenosylhomocysteinase (EC 3.3.1.1)
(S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
{Arabidopsis thaliana}; strong similarity to SP|P50248
Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
sylvestris}
Length = 1990
Score = 2557 bits (1290), Expect = 0.0
Identities = 1293/1294 (99%)
Strand = Plus / Plus
Query: 1 gttaagaggctttaccagatgcagcaaaatggaactcttttgttccctgccattaacgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gttaagaggctttaccagatgcagcaaaatggaactcttttgttccctgccattaacgtt 756
Query: 61 aacgactctgtcaccaagagcaagttcgacaacttgtatggttgccgtcactcactccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aacgactctgtcaccaagagcaagttcgacaacttgtatggttgccgtcactcactccct 816
Query: 121 gatggtctcatgagggccactgatgtcatgatcgctggaaaggttgctgttatctgtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gatggtctcatgagggccactgatgtcatgatcgctggaaaggttgctgttatctgtgga 876
Query: 181 tatggtgatgttggaaagggttgtgctgctgccatgaagactgctggtgctagagtcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tatggtgatgttggaaagggttgtgctgctgccatgaagactgctggtgctagagtcatt 936
Query: 241 gtgactgagattgatcccatctgtgcccttcaagctttgatggaaggacttcaggttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gtgactgagattgatcccatctgtgcccttcaagctttgatggaaggacttcaggttctt 996
Query: 301 acccttgaggatgttgtctcagaagctgatatctttgtcaccaccaccggtaacaaagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 acccttgaggatgttgtctcagaagctgatatctttgtcaccaccaccggtaacaaagac 1056
Query: 361 atcatcatggtcgaccacatgaggaagatgaagaacaacgctattgtgtgcaacattggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 atcatcatggtcgaccacatgaggaagatgaagaacaacgctattgtgtgcaacattggt 1116
Query: 421 cactttgacaatgagattgacatgcttggacttgagacttaccctggtgtgaagcgtatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 cactttgacaatgagattgacatgcttggacttgagacttaccctggtgtgaagcgtatc 1176
Query: 481 accatcaagccacagactgacaggtgggtgttcccagagaccaaggctggaatcattgtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 accatcaagccacagactgacaggtgggtgttcccagagaccaaggctggaatcattgtc 1236
Query: 541 ttggctgagggtcgtctgatgaacttgggttgtgccactggtcacccaagtttcgtgatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 ttggctgagggtcgtctgatgaacttgggttgtgccactggtcacccaagtttcgtgatg 1296
Query: 601 tcttgctctttcaccaaccaggtgattgcccagctcaagctctggaacgagaaagcaagc 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1297 tcttgctctttcaccaaccaggtgattgcccagctcgagctctggaacgagaaagcaagc 1356
Query: 661 ggaaagtacgagaagaaggtgtacgttcttcccaagcatttggatgagaaggttgcatta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 ggaaagtacgagaagaaggtgtacgttcttcccaagcatttggatgagaaggttgcatta 1416
Query: 721 cttcacttgggcaagcttggagccaggcttacaaagctgtcaaaggaccaatctgactac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 cttcacttgggcaagcttggagccaggcttacaaagctgtcaaaggaccaatctgactac 1476
Query: 781 gtcagcattccaattgagggaccatacaagcctcctcactacaggtactgagagagagag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 gtcagcattccaattgagggaccatacaagcctcctcactacaggtactgagagagagag 1536
Query: 841 agagtcgacaaagcggttcaggttcggatctacttgtggttttgtgttgggttgtggtgg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 agagtcgacaaagcggttcaggttcggatctacttgtggttttgtgttgggttgtggtgg 1596
Query: 901 gagagtggaacagtttgagatattggtcttctgatgaagttgaccaaatatcagtattaa 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 gagagtggaacagtttgagatattggtcttctgatgaagttgaccaaatatcagtattaa 1656
Query: 961 taagggttattggcttttgaaggttgtgcttgttttctccatttttcatgaaacttaaat 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 taagggttattggcttttgaaggttgtgcttgttttctccatttttcatgaaacttaaat 1716
Query: 1021 tagtttttggtttagtttccctcttgattttattttgtgtgttctgtttagcgttgtact 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1717 tagtttttggtttagtttccctcttgattttattttgtgtgttctgtttagcgttgtact 1776
Query: 1081 cttcaaacaaatgagaaaccaaaaaaaaaggggaaacttgttttcggcatcccagtgtta 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1777 cttcaaacaaatgagaaaccaaaaaaaaaggggaaacttgttttcggcatcccagtgtta 1836
Query: 1141 gcgacttttgttgaatgaatgtctcaaatgctcatctttaataatgtgtgttaggacacg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1837 gcgacttttgttgaatgaatgtctcaaatgctcatctttaataatgtgtgttaggacacg 1896
Query: 1201 aacaacacatggttcgattcgtgggggattttatggttgtagttattatcgtacacgttt 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1897 aacaacacatggttcgattcgtgggggattttatggttgtagttattatcgtacacgttt 1956
Query: 1261 caaagttctcttaagtattcaaaaaggcttttcc 1294
||||||||||||||||||||||||||||||||||
Sbjct: 1957 caaagttctcttaagtattcaaaaaggcttttcc 1990
>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
S-adenosyl-L-homocysteine hydrolase, putative /
AdoHcyase, putative strong similarity to
SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
(S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
{Nicotiana sylvestris}; contains Pfam profile PF00670:
S-adenosyl-L-homocysteine hydrolase, NAD binding domain
Length = 1849
Score = 759 bits (383), Expect = 0.0
Identities = 724/835 (86%), Gaps = 2/835 (0%)
Strand = Plus / Plus
Query: 1 gttaagaggctttaccagatgcagcaaaatggaactcttttgttccctgccattaacgtt 60
|||||||||||||| ||||||||| | | |||| |||| ||||||||||||||||||||
Sbjct: 670 gttaagaggctttatcagatgcaggagactggagctctcttgttccctgccattaacgtc 729
Query: 61 aacgactctgtcaccaagagcaagttcgacaacttgtatggttgccgtcactcactccct 120
|| ||||||||||||||||||||||| ||||||||||| || ||||| ||||| || ||
Sbjct: 730 aatgactctgtcaccaagagcaagtttgacaacttgtacggatgccgacactcgcttccc 789
Query: 121 gatggtctcatgagggccactgatgtcatgatcgctggaaaggttgctgttatctgtgga 180
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 790 gatggtctcatgagggctactgatgttatgattgctggaaaggttgctgttatctgtggt 849
Query: 181 tatggtgatgttggaaagggttgtgctgctgccatgaagactgctggtgctagagtcatt 240
||||||||||| ||||| ||||||||||| || ||||| || || |||||| | |||||
Sbjct: 850 tatggtgatgtaggaaaaggttgtgctgcagcaatgaaaaccgcgggtgctcgtgtcata 909
Query: 241 gtgactgagattgatcccatctgtgcccttcaagctttgatggaaggacttcaggttctt 300
||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||| |||||
Sbjct: 910 gtgactgagattgatccaatctgtgctcttcaggctcttatggaaggtcttcaagttctg 969
Query: 301 acccttgaggatgttgtctcagaagctgatatctt-tgtcaccaccaccggtaacaaaga 359
||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||||
Sbjct: 970 acccttgaggatgttgtctcagaagctgatatcttctgt-accactactggtaacaaaga 1028
Query: 360 catcatcatggtcgaccacatgaggaagatgaagaacaacgctattgtgtgcaacattgg 419
|| || ||||| || ||||||||||||||||||||||| || ||||| || ||||||||
Sbjct: 1029 tattattatggttgatcacatgaggaagatgaagaacaatgccattgtctgtaacattgg 1088
Query: 420 tcactttgacaatgagattgacatgcttggacttgagacttaccctggtgtgaagcgtat 479
||| ||||||||||| || |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1089 tcattttgacaatgaaatcgacatgcttggacttgagacctaccctggtgtgaaacgtat 1148
Query: 480 caccatcaagccacagactgacaggtgggtgttcccagagaccaaggctggaatcattgt 539
||||||||||||||||| || ||||||||||| || || ||||| |||| ||||||||
Sbjct: 1149 taccatcaagccacagaccgataggtgggtgtttcctgataccaactctggcatcattgt 1208
Query: 540 cttggctgagggtcgtctgatgaacttgggttgtgccactggtcacccaagtttcgtgat 599
| ||||| |||||| ||||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 1209 tctagctgaaggtcgtttgatgaacttgggatgcgccactggacacccgagtttcgtgat 1268
Query: 600 gtcttgctctttcaccaaccaggtgattgcccagctcaagctctggaacgagaaagcaag 659
||| ||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct: 1269 gtcgtgctcattcaccaaccaggtgattgcacagcttgagctctggaacgagaagtcaag 1328
Query: 660 cggaaagtacgagaagaaggtgtacgttcttcccaagcatttggatgagaaggttgcatt 719
||| ||||| ||||||||||| || ||| | || || || |||||||||||||| ||
Sbjct: 1329 cgggaagtatgagaagaaggtctatgttttgcctaaacacttggatgagaaggtagctgc 1388
Query: 720 acttcacttgggcaagcttggagccaggcttacaaagctgtcaaaggaccaatctgacta 779
||||||||| ||||||||||| || || || || ||||| | |||||||||||||||||
Sbjct: 1389 acttcacttaggcaagcttggtgcaagactcaccaagcttaccaaggaccaatctgacta 1448
Query: 780 cgtcagcattccaattgagggaccatacaagcctcctcactacaggtactgagag 834
|||||||| || |||| || || ||||||||| |||||||||||||||||||
Sbjct: 1449 tgtcagcatacccgttgaaggtccttacaagcctgttcactacaggtactgagag 1503
Score = 46.1 bits (23), Expect = 7e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 916 tgagatattggtcttctgatgaagttgaccaaatatcagtattaataaggg 966
||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct: 1604 tgagatattggtcttctgatgcgtgtgaccaaatattggtatgaataaggg 1654
>At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein (ZFP7)
identical to zinc finger protein, ZFP7
gi|790685|gb|AAA87303; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 1031
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 823 aggtactgagagagagagagag 844
||||||||||||||||||||||
Sbjct: 68 aggtactgagagagagagagag 47
>At5g01380.1 68418.m00051 expressed protein
Length = 1188
Score = 40.1 bits (20), Expect = 0.046
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 183 tggtgatgttggaaagggtt 202
||||||||||||||||||||
Sbjct: 103 tggtgatgttggaaagggtt 84
>At3g12710.1 68416.m01588 methyladenine glycosylase family protein similar to
SP|P05100 DNA-3-methyladenine glycosylase I (EC
3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 1341
Score = 40.1 bits (20), Expect = 0.046
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 825 gtactgagagagagagagag 844
||||||||||||||||||||
Sbjct: 123 gtactgagagagagagagag 104
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,278
Number of Sequences: 29161
Number of extensions: 53278
Number of successful extensions: 4099
Number of sequences better than 10.0: 65
length of query: 1294
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1276
effective length of database: 43,533,334
effective search space: 55548534184
effective search space used: 55548534184
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)