BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.10.cl.1014.Contig1
         (1294 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13940.1  68417.m02157 adenosylhomocysteinase / S-adenosy...  2557   0.0  
At3g23810.1  68416.m02993 adenosylhomocysteinase, putative /...   759   0.0  
At1g24625.1  68414.m03099 zinc finger (C2H2 type) family pro...    44   0.003
At5g01380.1  68418.m00051 expressed protein                        40   0.046
At3g12710.1  68416.m01588 methyladenine glycosylase family p...    40   0.046
>At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-homocysteine
            hydrolase / AdoHcyase (SAHH) identical to SP|O23255
            Adenosylhomocysteinase (EC 3.3.1.1)
            (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
            {Arabidopsis thaliana}; strong similarity to SP|P50248
            Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
            sylvestris}
          Length = 1990

 Score = 2557 bits (1290), Expect = 0.0
 Identities = 1293/1294 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    gttaagaggctttaccagatgcagcaaaatggaactcttttgttccctgccattaacgtt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  gttaagaggctttaccagatgcagcaaaatggaactcttttgttccctgccattaacgtt 756

                                                                        
Query: 61   aacgactctgtcaccaagagcaagttcgacaacttgtatggttgccgtcactcactccct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  aacgactctgtcaccaagagcaagttcgacaacttgtatggttgccgtcactcactccct 816

                                                                        
Query: 121  gatggtctcatgagggccactgatgtcatgatcgctggaaaggttgctgttatctgtgga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  gatggtctcatgagggccactgatgtcatgatcgctggaaaggttgctgttatctgtgga 876

                                                                        
Query: 181  tatggtgatgttggaaagggttgtgctgctgccatgaagactgctggtgctagagtcatt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  tatggtgatgttggaaagggttgtgctgctgccatgaagactgctggtgctagagtcatt 936

                                                                        
Query: 241  gtgactgagattgatcccatctgtgcccttcaagctttgatggaaggacttcaggttctt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  gtgactgagattgatcccatctgtgcccttcaagctttgatggaaggacttcaggttctt 996

                                                                        
Query: 301  acccttgaggatgttgtctcagaagctgatatctttgtcaccaccaccggtaacaaagac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  acccttgaggatgttgtctcagaagctgatatctttgtcaccaccaccggtaacaaagac 1056

                                                                        
Query: 361  atcatcatggtcgaccacatgaggaagatgaagaacaacgctattgtgtgcaacattggt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 atcatcatggtcgaccacatgaggaagatgaagaacaacgctattgtgtgcaacattggt 1116

                                                                        
Query: 421  cactttgacaatgagattgacatgcttggacttgagacttaccctggtgtgaagcgtatc 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 cactttgacaatgagattgacatgcttggacttgagacttaccctggtgtgaagcgtatc 1176

                                                                        
Query: 481  accatcaagccacagactgacaggtgggtgttcccagagaccaaggctggaatcattgtc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 accatcaagccacagactgacaggtgggtgttcccagagaccaaggctggaatcattgtc 1236

                                                                        
Query: 541  ttggctgagggtcgtctgatgaacttgggttgtgccactggtcacccaagtttcgtgatg 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 ttggctgagggtcgtctgatgaacttgggttgtgccactggtcacccaagtttcgtgatg 1296

                                                                        
Query: 601  tcttgctctttcaccaaccaggtgattgcccagctcaagctctggaacgagaaagcaagc 660
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1297 tcttgctctttcaccaaccaggtgattgcccagctcgagctctggaacgagaaagcaagc 1356

                                                                        
Query: 661  ggaaagtacgagaagaaggtgtacgttcttcccaagcatttggatgagaaggttgcatta 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 ggaaagtacgagaagaaggtgtacgttcttcccaagcatttggatgagaaggttgcatta 1416

                                                                        
Query: 721  cttcacttgggcaagcttggagccaggcttacaaagctgtcaaaggaccaatctgactac 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 cttcacttgggcaagcttggagccaggcttacaaagctgtcaaaggaccaatctgactac 1476

                                                                        
Query: 781  gtcagcattccaattgagggaccatacaagcctcctcactacaggtactgagagagagag 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 gtcagcattccaattgagggaccatacaagcctcctcactacaggtactgagagagagag 1536

                                                                        
Query: 841  agagtcgacaaagcggttcaggttcggatctacttgtggttttgtgttgggttgtggtgg 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 agagtcgacaaagcggttcaggttcggatctacttgtggttttgtgttgggttgtggtgg 1596

                                                                        
Query: 901  gagagtggaacagtttgagatattggtcttctgatgaagttgaccaaatatcagtattaa 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 gagagtggaacagtttgagatattggtcttctgatgaagttgaccaaatatcagtattaa 1656

                                                                        
Query: 961  taagggttattggcttttgaaggttgtgcttgttttctccatttttcatgaaacttaaat 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 taagggttattggcttttgaaggttgtgcttgttttctccatttttcatgaaacttaaat 1716

                                                                        
Query: 1021 tagtttttggtttagtttccctcttgattttattttgtgtgttctgtttagcgttgtact 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1717 tagtttttggtttagtttccctcttgattttattttgtgtgttctgtttagcgttgtact 1776

                                                                        
Query: 1081 cttcaaacaaatgagaaaccaaaaaaaaaggggaaacttgttttcggcatcccagtgtta 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1777 cttcaaacaaatgagaaaccaaaaaaaaaggggaaacttgttttcggcatcccagtgtta 1836

                                                                        
Query: 1141 gcgacttttgttgaatgaatgtctcaaatgctcatctttaataatgtgtgttaggacacg 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1837 gcgacttttgttgaatgaatgtctcaaatgctcatctttaataatgtgtgttaggacacg 1896

                                                                        
Query: 1201 aacaacacatggttcgattcgtgggggattttatggttgtagttattatcgtacacgttt 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1897 aacaacacatggttcgattcgtgggggattttatggttgtagttattatcgtacacgttt 1956

                                              
Query: 1261 caaagttctcttaagtattcaaaaaggcttttcc 1294
            ||||||||||||||||||||||||||||||||||
Sbjct: 1957 caaagttctcttaagtattcaaaaaggcttttcc 1990
>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
            S-adenosyl-L-homocysteine hydrolase, putative /
            AdoHcyase, putative strong similarity to
            SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
            (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
            {Nicotiana sylvestris}; contains Pfam profile PF00670:
            S-adenosyl-L-homocysteine hydrolase, NAD binding domain
          Length = 1849

 Score =  759 bits (383), Expect = 0.0
 Identities = 724/835 (86%), Gaps = 2/835 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gttaagaggctttaccagatgcagcaaaatggaactcttttgttccctgccattaacgtt 60
            |||||||||||||| ||||||||| | | |||| |||| |||||||||||||||||||| 
Sbjct: 670  gttaagaggctttatcagatgcaggagactggagctctcttgttccctgccattaacgtc 729

                                                                        
Query: 61   aacgactctgtcaccaagagcaagttcgacaacttgtatggttgccgtcactcactccct 120
            || ||||||||||||||||||||||| ||||||||||| || ||||| ||||| || || 
Sbjct: 730  aatgactctgtcaccaagagcaagtttgacaacttgtacggatgccgacactcgcttccc 789

                                                                        
Query: 121  gatggtctcatgagggccactgatgtcatgatcgctggaaaggttgctgttatctgtgga 180
            ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 790  gatggtctcatgagggctactgatgttatgattgctggaaaggttgctgttatctgtggt 849

                                                                        
Query: 181  tatggtgatgttggaaagggttgtgctgctgccatgaagactgctggtgctagagtcatt 240
            ||||||||||| ||||| ||||||||||| || ||||| || || |||||| | ||||| 
Sbjct: 850  tatggtgatgtaggaaaaggttgtgctgcagcaatgaaaaccgcgggtgctcgtgtcata 909

                                                                        
Query: 241  gtgactgagattgatcccatctgtgcccttcaagctttgatggaaggacttcaggttctt 300
            ||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||| ||||| 
Sbjct: 910  gtgactgagattgatccaatctgtgctcttcaggctcttatggaaggtcttcaagttctg 969

                                                                        
Query: 301  acccttgaggatgttgtctcagaagctgatatctt-tgtcaccaccaccggtaacaaaga 359
            ||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||||
Sbjct: 970  acccttgaggatgttgtctcagaagctgatatcttctgt-accactactggtaacaaaga 1028

                                                                        
Query: 360  catcatcatggtcgaccacatgaggaagatgaagaacaacgctattgtgtgcaacattgg 419
             || || ||||| || ||||||||||||||||||||||| || ||||| || ||||||||
Sbjct: 1029 tattattatggttgatcacatgaggaagatgaagaacaatgccattgtctgtaacattgg 1088

                                                                        
Query: 420  tcactttgacaatgagattgacatgcttggacttgagacttaccctggtgtgaagcgtat 479
            ||| ||||||||||| || |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1089 tcattttgacaatgaaatcgacatgcttggacttgagacctaccctggtgtgaaacgtat 1148

                                                                        
Query: 480  caccatcaagccacagactgacaggtgggtgttcccagagaccaaggctggaatcattgt 539
             ||||||||||||||||| || ||||||||||| || || |||||  |||| ||||||||
Sbjct: 1149 taccatcaagccacagaccgataggtgggtgtttcctgataccaactctggcatcattgt 1208

                                                                        
Query: 540  cttggctgagggtcgtctgatgaacttgggttgtgccactggtcacccaagtttcgtgat 599
              | ||||| |||||| ||||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 1209 tctagctgaaggtcgtttgatgaacttgggatgcgccactggacacccgagtttcgtgat 1268

                                                                        
Query: 600  gtcttgctctttcaccaaccaggtgattgcccagctcaagctctggaacgagaaagcaag 659
            ||| ||||| |||||||||||||||||||| |||||  ||||||||||||||||  ||||
Sbjct: 1269 gtcgtgctcattcaccaaccaggtgattgcacagcttgagctctggaacgagaagtcaag 1328

                                                                        
Query: 660  cggaaagtacgagaagaaggtgtacgttcttcccaagcatttggatgagaaggttgcatt 719
            ||| ||||| ||||||||||| || ||| | || || || |||||||||||||| ||   
Sbjct: 1329 cgggaagtatgagaagaaggtctatgttttgcctaaacacttggatgagaaggtagctgc 1388

                                                                        
Query: 720  acttcacttgggcaagcttggagccaggcttacaaagctgtcaaaggaccaatctgacta 779
            ||||||||| ||||||||||| || || || || |||||  | |||||||||||||||||
Sbjct: 1389 acttcacttaggcaagcttggtgcaagactcaccaagcttaccaaggaccaatctgacta 1448

                                                                   
Query: 780  cgtcagcattccaattgagggaccatacaagcctcctcactacaggtactgagag 834
             |||||||| ||  |||| || || |||||||||  |||||||||||||||||||
Sbjct: 1449 tgtcagcatacccgttgaaggtccttacaagcctgttcactacaggtactgagag 1503

 Score = 46.1 bits (23), Expect = 7e-04
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                               
Query: 916  tgagatattggtcttctgatgaagttgaccaaatatcagtattaataaggg 966
            |||||||||||||||||||||    |||||||||||  |||| ||||||||
Sbjct: 1604 tgagatattggtcttctgatgcgtgtgaccaaatattggtatgaataaggg 1654
>At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein (ZFP7)
           identical to zinc finger protein, ZFP7
           gi|790685|gb|AAA87303; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 1031

 Score = 44.1 bits (22), Expect = 0.003
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 823 aggtactgagagagagagagag 844
           ||||||||||||||||||||||
Sbjct: 68  aggtactgagagagagagagag 47
>At5g01380.1 68418.m00051 expressed protein 
          Length = 1188

 Score = 40.1 bits (20), Expect = 0.046
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 183 tggtgatgttggaaagggtt 202
           ||||||||||||||||||||
Sbjct: 103 tggtgatgttggaaagggtt 84
>At3g12710.1 68416.m01588 methyladenine glycosylase family protein similar to
           SP|P05100 DNA-3-methyladenine glycosylase I (EC
           3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 1341

 Score = 40.1 bits (20), Expect = 0.046
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 825 gtactgagagagagagagag 844
           ||||||||||||||||||||
Sbjct: 123 gtactgagagagagagagag 104
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,278
Number of Sequences: 29161
Number of extensions: 53278
Number of successful extensions: 4099
Number of sequences better than 10.0: 65
length of query: 1294
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1276
effective length of database: 43,533,334
effective search space: 55548534184
effective search space used: 55548534184
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)