BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU228261_RAFL16_06_D14.r
(455 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30835.1 68414.m03770 expressed protein 414 e-115
At5g04190.1 68418.m00407 phytochrome kinase substrate-relat... 36 0.25
At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1... 36 0.25
At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1... 36 0.25
At5g46520.1 68418.m05728 disease resistance protein (TIR-NB... 34 0.97
>At1g30835.1 68414.m03770 expressed protein
Length = 1178
Score = 414 bits (209), Expect = e-115
Identities = 219/221 (99%), Gaps = 1/221 (0%)
Strand = Plus / Minus
Query: 28 taattagtcggatacaaacacaaaatacatcctcggaaaaacctcgagggaaagcacaaa 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 taattagtcggatacaaacacaaaatacatcctcggaaaaacctcgagggaaagcacaaa 1119
Query: 88 tatacacgacggaaggagagaaactgttctacgcagagccttgtcggacccgcgaaaatg 147
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1118 tatacacgacggaaggagagaaacggttctacgcagagccttgtcggacccgcgaaaatg 1059
Query: 148 gaagcaacgatagaggtcagacggagagaaaaacggaggagccagcggtggaggatgctt 207
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1058 gaagcaacgatagaggtcagacggagagaaaaacggaggag-cagcggtggaggatgctt 1000
Query: 208 gtcttgaaacggagcgagacggcggcagctgctttgggcac 248
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 gtcttgaaacggagcgagacggcggcagctgctttgggcac 959
>At5g04190.1 68418.m00407 phytochrome kinase substrate-related contains
similarity to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 1590
Score = 36.2 bits (18), Expect = 0.25
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 139 gcgaaaatggaagcaacgatag 160
||||||| ||||||||||||||
Sbjct: 416 gcgaaaacggaagcaacgatag 437
>At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) identical to
holocarboxylase synthetase 1 (hcs1) [Arabidopsis
thaliana] GI:19698365
Length = 1477
Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 285 actctttagataatcaga 302
||||||||||||||||||
Sbjct: 1470 actctttagataatcaga 1453
>At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) identical to
holocarboxylase synthetase 1 (hcs1) [Arabidopsis
thaliana] GI:19698365
Length = 1469
Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 285 actctttagataatcaga 302
||||||||||||||||||
Sbjct: 1462 actctttagataatcaga 1445
>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR class), putative
domain signature TIR-NBS-LRR exists, suggestive of a
disease resistance protein.
Length = 3897
Score = 34.2 bits (17), Expect = 0.97
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 292 agataatcagaaattca 308
|||||||||||||||||
Sbjct: 3889 agataatcagaaattca 3873
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,804
Number of Sequences: 29161
Number of extensions: 16804
Number of successful extensions: 1367
Number of sequences better than 10.0: 33
length of query: 455
length of database: 44,058,232
effective HSP length: 17
effective length of query: 438
effective length of database: 43,562,495
effective search space: 19080372810
effective search space used: 19080372810
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)