BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AI996669.x
(556 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30835.1 68414.m03770 expressed protein 1102 0.0
At4g01440.1 68417.m00185 nodulin MtN21 family protein simil... 40 0.019
At1g64040.1 68414.m07254 serine/threonine protein phosphata... 40 0.019
At1g26700.1 68414.m03252 seven transmembrane MLO family pro... 38 0.077
At1g25886.1 68414.m03180 Ulp1 protease family protein conta... 38 0.077
>At1g30835.1 68414.m03770 expressed protein
Length = 1178
Score = 1102 bits (556), Expect = 0.0
Identities = 556/556 (100%)
Strand = Plus / Minus
Query: 1 taattagtcggatacaaacacaaaatacatcctcggaaaaacctcgagggaaagcacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 taattagtcggatacaaacacaaaatacatcctcggaaaaacctcgagggaaagcacaaa 1119
Query: 61 tatacacgacggaaggagagaaacggttctacgcagagccttgtcggacccgcgaaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 tatacacgacggaaggagagaaacggttctacgcagagccttgtcggacccgcgaaaatg 1059
Query: 121 gaagcaacgatagaggtcagacggagagaaaaacggaggagcagcggtggaggatgcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 gaagcaacgatagaggtcagacggagagaaaaacggaggagcagcggtggaggatgcttg 999
Query: 181 tcttgaaacggagcgagacggcggcagctgctttgggcaccgtgcttgccacggaagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 tcttgaaacggagcgagacggcggcagctgctttgggcaccgtgcttgccacggaagcaa 939
Query: 241 acgatgagcaaaacaaagccgaagaaaaatttacgaagagatagaactaaccacccacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 acgatgagcaaaacaaagccgaagaaaaatttacgaagagatagaactaaccacccacac 879
Query: 301 ttgacatagctatgaaaatcgtattccacttgaaaagggccaatcgttcccgaaaaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttgacatagctatgaaaatcgtattccacttgaaaagggccaatcgttcccgaaaaaaaa 819
Query: 361 cctctcttctctctcttgaaaactagatgttaaatctactttttttgctttttcttttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cctctcttctctctcttgaaaactagatgttaaatctactttttttgctttttcttttcc 759
Query: 421 gattgaagatcttcaaagatagttgatgggctgtagagttaagtggtggtgagcatctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gattgaagatcttcaaagatagttgatgggctgtagagttaagtggtggtgagcatctct 699
Query: 481 cttctccggtggtgtgaggcgtggttaggtccatggctcgatgctagacggcagctctcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cttctccggtggtgtgaggcgtggttaggtccatggctcgatgctagacggcagctctcc 639
Query: 541 ttcacgacagccagag 556
||||||||||||||||
Sbjct: 638 ttcacgacagccagag 623
>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to MtN21 GI:2598575
(root nodule development) from [Medicago truncatula]
Length = 1436
Score = 40.1 bits (20), Expect = 0.019
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 400 tttttttgctttttcttttc 419
||||||||||||||||||||
Sbjct: 1354 tttttttgctttttcttttc 1373
>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1 isozyme 3
(TOPP3) / phosphoprotein phosphatase 1 identical to
SP|P48483 Serine/threonine protein phosphatase PP1
isozyme 3 (EC 3.1.3.16) {Arabidopsis thaliana},
phosphoprotein phosphatase 1 GB:AAA32838 GI:166799 from
[Arabidopsis thaliana]
Length = 1587
Score = 40.1 bits (20), Expect = 0.019
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 357 aaaacctctcttctctctct 376
||||||||||||||||||||
Sbjct: 97 aaaacctctcttctctctct 116
>At1g26700.1 68414.m03252 seven transmembrane MLO family protein / MLO-like
protein 14 (MLO14) identical to membrane protein Mlo14
[Arabidopsis thaliana] gi|14091598|gb|AAK53807; similar
to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
[Hordeum vulgare][Barley]
Length = 1733
Score = 38.2 bits (19), Expect = 0.077
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 306 atagctatgaaaatcgtat 324
|||||||||||||||||||
Sbjct: 878 atagctatgaaaatcgtat 860
>At1g25886.1 68414.m03180 Ulp1 protease family protein contains Pfam profile
PF02902: Ulp1 protease family, C-terminal catalytic
domain; similar to At3g24380, At5g36840, At5g35010,
At3g42740, At4g05290, At2g14770, At3g43390, At2g05560,
At4g08880, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At4g03300
Length = 3606
Score = 38.2 bits (19), Expect = 0.077
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 254 caaagccgaagaaaaattt 272
|||||||||||||||||||
Sbjct: 1661 caaagccgaagaaaaattt 1679
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,735
Number of Sequences: 29161
Number of extensions: 20735
Number of successful extensions: 1895
Number of sequences better than 10.0: 76
length of query: 556
length of database: 44,058,232
effective HSP length: 17
effective length of query: 539
effective length of database: 43,562,495
effective search space: 23480184805
effective search space used: 23480184805
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)