BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU227579_RAFL15_12_A13.r
(503 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196142.3| expressed protein [Arabidopsis thaliana] 74 1e-12
gb|AAO60024.1| hypothetical protein [Oryza sativa (japonica... 69 4e-11
dbj|BAD22941.1| unknown protein [Oryza sativa (japonica cul... 61 1e-08
gb|AAO11670.1| hypothetical protein [Arabidopsis thaliana] 60 2e-08
ref|NP_850332.1| expressed protein [Arabidopsis thaliana] 60 2e-08
ref|NP_683575.2| expressed protein [Arabidopsis thaliana]|g... 56 4e-07
dbj|BAB01304.1| unnamed protein product [Arabidopsis thaliana] 56 4e-07
ref|NP_269583.1| putative amino acid ABC transporter (perme... 34 1.1
ref|NP_607595.1| putative amino acid ABC transporter (perme... 34 1.1
ref|NP_664965.1| putative amino acid ABC transporter (perme... 34 1.1
>ref|NP_196142.3| expressed protein [Arabidopsis thaliana]
Length = 363
Score = 73.9 bits (180), Expect = 1e-12
Identities = 40/49 (81%), Positives = 42/49 (85%)
Frame = -1
Query: 503 FVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSVGLKLQKIPSG*KAT 357
FVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRS+ K + PS KAT
Sbjct: 308 FVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLA-KAPEDPSA-KAT 354
>gb|AAO60024.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 348
Score = 68.9 bits (167), Expect = 4e-11
Identities = 38/62 (61%), Positives = 42/62 (67%), Gaps = 6/62 (9%)
Frame = -1
Query: 503 FVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSVGLKLQKIPSG*KAT------TQNQE 342
FVGR AVVT QCLNGWYVVKTLDNAESVKLQYRS L K G +++ QN
Sbjct: 291 FVGRVAVVTAQCLNGWYVVKTLDNAESVKLQYRS----LAKFTDGGQSSAMVANNAQNAN 346
Query: 341 WV 336
W+
Sbjct: 347 WL 348
>dbj|BAD22941.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 522
Score = 60.8 bits (146), Expect = 1e-08
Identities = 24/35 (68%), Positives = 33/35 (93%)
Frame = -1
Query: 503 FVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSV 399
FVG+EAV+T+QCLNGWY+VK +D+ ES++LQYRS+
Sbjct: 459 FVGKEAVITSQCLNGWYLVKAVDSGESIRLQYRSL 493
>gb|AAO11670.1| hypothetical protein [Arabidopsis thaliana]
Length = 383
Score = 59.7 bits (143), Expect = 2e-08
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = -1
Query: 503 FVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSV 399
FVGR AV+ TQCLNGWYVVKT+DN+ES+KLQ+ S+
Sbjct: 328 FVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSL 362
>ref|NP_850332.1| expressed protein [Arabidopsis thaliana]
Length = 383
Score = 59.7 bits (143), Expect = 2e-08
Identities = 26/35 (74%), Positives = 32/35 (91%)
Frame = -1
Query: 503 FVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSV 399
FVGR AV+ TQCLNGWYVVKT+DN+ES+KLQ+ S+
Sbjct: 328 FVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSL 362
>ref|NP_683575.2| expressed protein [Arabidopsis
thaliana]|gi|26452927|dbj|BAC43540.1| unknown protein
[Arabidopsis thaliana]
Length = 554
Score = 55.8 bits (133), Expect = 4e-07
Identities = 21/35 (60%), Positives = 33/35 (94%)
Frame = -1
Query: 503 FVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSV 399
FVG+EA+VT+QCLNGWY++K +++ ++V+LQYRS+
Sbjct: 498 FVGKEAIVTSQCLNGWYLLKIVESGDNVRLQYRSL 532
>dbj|BAB01304.1| unnamed protein product [Arabidopsis thaliana]
Length = 565
Score = 55.8 bits (133), Expect = 4e-07
Identities = 21/35 (60%), Positives = 33/35 (94%)
Frame = -1
Query: 503 FVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSV 399
FVG+EA+VT+QCLNGWY++K +++ ++V+LQYRS+
Sbjct: 509 FVGKEAIVTSQCLNGWYLLKIVESGDNVRLQYRSL 543
>ref|NP_269583.1| putative amino acid ABC transporter (permease protein)
[Streptococcus pyogenes M1
GAS]|gi|13622596|gb|AAK34304.1| putative amino acid ABC
transporter (permease protein) [Streptococcus pyogenes
M1 GAS]
Length = 228
Score = 34.3 bits (77), Expect = 1.1
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 221 GVSLTISRKP*GKPENWVVQSMVWLNKGLGLVLEAQFKRPILGFGWLLFSLMGSSG 388
GV +T+ ++ KP WVV VW+ +G +V++ ++ F W+ F+ M + G
Sbjct: 35 GVLVTLIKRSHVKPLTWVVNLYVWIFRGTPMVVQI-----MIAFAWMHFNNMPTIG 85
>ref|NP_607595.1| putative amino acid ABC transporter (permease protein)
[Streptococcus pyogenes
MGAS8232]|gi|19748662|gb|AAL98094.1| putative amino acid
ABC transporter (permease protein) [Streptococcus
pyogenes MGAS8232]
Length = 228
Score = 34.3 bits (77), Expect = 1.1
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 221 GVSLTISRKP*GKPENWVVQSMVWLNKGLGLVLEAQFKRPILGFGWLLFSLMGSSG 388
GV +T+ ++ KP WVV VW+ +G +V++ ++ F W+ F+ M + G
Sbjct: 35 GVLVTLIKRSHVKPLTWVVNLYVWIFRGTPMVVQI-----MIAFAWMHFNNMPTIG 85
>ref|NP_664965.1| putative amino acid ABC transporter (permease protein)
[Streptococcus pyogenes
MGAS315]|gi|28895613|ref|NP_801963.1| putative amino
acid ABC transporter (permease protein) [Streptococcus
pyogenes SSI-1]|gi|21904900|gb|AAM79768.1| putative
amino acid ABC transporter (permease protein)
[Streptococcus pyogenes
MGAS315]|gi|28810862|dbj|BAC63796.1| putative amino acid
ABC transporter (permease protein) [Streptococcus
pyogenes SSI-1]
Length = 228
Score = 34.3 bits (77), Expect = 1.1
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 221 GVSLTISRKP*GKPENWVVQSMVWLNKGLGLVLEAQFKRPILGFGWLLFSLMGSSG 388
GV +T+ ++ KP WVV VW+ +G +V++ ++ F W+ F+ M + G
Sbjct: 35 GVLVTLIKRSHVKPLTWVVNLYVWIFRGTPMVVQI-----MIAFAWMHFNNMPTIG 85
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 116
effective length of database: 409,858,350
effective search space used: 20902775850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)