BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.009.Contig1
         (725 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_694466.1|  Vp8 [Kadipiro virus]|gi|3850247|gb|AAC7204...    34   3.3  
pir||T04452  transforming protein myb homolog F4D11.70 - Ara...    33   5.7  
ref|NP_194999.1|  myb family transcription factor [Arabidops...    33   5.7  
ref|NP_974718.1|  myb family transcription factor [Arabidops...    33   5.7  
ref|NP_201138.1|  DNA-binding bromodomain-containing protein...    33   5.7  
ref|XP_396127.1|  similar to ENSANGP00000013112 [Apis mellif...    32   9.7  

>ref|NP_694466.1| Vp8 [Kadipiro virus]|gi|3850247|gb|AAC72049.1| Vp8 [Kadipiro virus]
          Length = 302

 Score = 33.9 bits (76), Expect = 3.3
 Identities = 26/88 (29%), Positives = 39/88 (43%), Gaps = 4/88 (4%)
 Frame = -1

Query: 467 WSPPKKIVDSIETQNAAICMLNPVIAIVNSKALK----TNLQLHGNSTSKSSQLNVNGSR 300
           W+   K++  +  +N   C+        N K L      N  L  N + K+S LNV  + 
Sbjct: 143 WNRLYKLLSDLALENGFNCITRK-----NGKGLLFRSLLNDDLVANESFKNSSLNVAFNT 197

Query: 299 TQASYSSILCWRELCLGKDESPKTTTLT 216
           T+    S+LC+   C G   SP +T LT
Sbjct: 198 TEDKEVSMLCYNRCCQGSG-SPPSTDLT 224



>pir||T04452 transforming protein myb homolog F4D11.70 - Arabidopsis thaliana
           (fragment)|gi|3063697|emb|CAA18588.1| putative
           myb-protein (partial) [Arabidopsis thaliana]
          Length = 715

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 476 ENHW-SPPKKIVDSIETQNAAI-CMLNPVIAIVNSKALKTNLQLHGNSTSKSSQLNVNGS 303
           +NHW S  KK +DS         C  +P+IA+ N     ++  +H N    SS+  V+  
Sbjct: 116 KNHWNSSVKKKLDSYYASGLLDQCQSSPLIALQNKSIASSSSWMHSNGDEGSSRPGVDAE 175

Query: 302 RTQASYSS 279
            ++ S +S
Sbjct: 176 ESECSQAS 183



>ref|NP_194999.1| myb family transcription factor [Arabidopsis
           thaliana]|gi|25387541|pir||E85384 probable myb-protein
           [imported] - Arabidopsis
           thaliana|gi|5678827|gb|AAD46772.1| PC-MYB1 [Arabidopsis
           thaliana]|gi|5915721|gb|AAD53110.2| putative c-myb-like
           transcription factor [Arabidopsis
           thaliana]|gi|7270220|emb|CAB79990.1| putative
           myb-protein [Arabidopsis
           thaliana]|gi|8574642|gb|AAF77637.1| putative c-myb-like
           transcription factor [Arabidopsis thaliana]
          Length = 776

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 476 ENHW-SPPKKIVDSIETQNAAI-CMLNPVIAIVNSKALKTNLQLHGNSTSKSSQLNVNGS 303
           +NHW S  KK +DS         C  +P+IA+ N     ++  +H N    SS+  V+  
Sbjct: 177 KNHWNSSVKKKLDSYYASGLLDQCQSSPLIALQNKSIASSSSWMHSNGDEGSSRPGVDAE 236

Query: 302 RTQASYSS 279
            ++ S +S
Sbjct: 237 ESECSQAS 244



>ref|NP_974718.1| myb family transcription factor [Arabidopsis thaliana]
          Length = 995

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 476 ENHW-SPPKKIVDSIETQNAAI-CMLNPVIAIVNSKALKTNLQLHGNSTSKSSQLNVNGS 303
           +NHW S  KK +DS         C  +P+IA+ N     ++  +H N    SS+  V+  
Sbjct: 177 KNHWNSSVKKKLDSYYASGLLDQCQSSPLIALQNKSIASSSSWMHSNGDEGSSRPGVDAE 236

Query: 302 RTQASYSS 279
            ++ S +S
Sbjct: 237 ESECSQAS 244



>ref|NP_201138.1| DNA-binding bromodomain-containing protein [Arabidopsis
           thaliana]|gi|10177441|dbj|BAB10737.1| unnamed protein
           product [Arabidopsis thaliana]
          Length = 477

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 17/40 (42%), Positives = 24/40 (59%)
 Frame = -3

Query: 567 IRKKEESLKQNLKHVS*KG*VLKTREKKKIGESLVAAEED 448
           +RKKE ++  N   V     V+   EKKK+G+ L+A EED
Sbjct: 293 MRKKEAAMNDNKLRVEPAKLVMTDGEKKKLGQDLMALEED 332



>ref|XP_396127.1| similar to ENSANGP00000013112 [Apis mellifera]
          Length = 717

 Score = 32.3 bits (72), Expect = 9.7
 Identities = 37/176 (21%), Positives = 77/176 (43%)
 Frame = -3

Query: 600 KPNYEAQVGNRIRKKEESLKQNLKHVS*KG*VLKTREKKKIGESLVAAEEDCRLH*NPER 421
           KPN   +  +R    +  L+ + +  S K   L+ +E+ K  E      +    H N   
Sbjct: 279 KPNDRHREDSRKEDSKRRLEDDKRRDSIKKDELRKKEQDKREEERRRDSD----HHNSRS 334

Query: 420 RDMHVESGDSNCQFQSSKNKSSTSWKFNFKIFPIKRQRFTNSSIIFINLMLERIVFRQRR 241
           R+       ++   + S+++     + N +   I R R         ++  +R + R R 
Sbjct: 335 RNECKSLDKTDKSRRESRDRLENRERQNSRDRHISRDR---------HISRDRHISRDRH 385

Query: 240 IT*NHNTNIDRIIYSTEKTKSGNR*PKQSRTSPETKLNHTRDKTSKQTGWRNKDRV 73
           I+ + +T+ DR    T K +  +R  ++SR  P ++  H+RD+   +  + ++DR+
Sbjct: 386 ISRDRHTSRDR---HTSKDRPTSR-DRRSRDRPASRDRHSRDQRDSKEHYTDRDRI 437



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 122
effective length of database: 398,486,562
effective search space used: 47419900878
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)