BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.086.Contig1
         (1847 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66675.1  68418.m08405 expressed protein                      3600   0.0  
At2g18630.1  68415.m02169 expressed protein unusual splice s...    88   3e-16
At5g66670.1  68418.m08404 hypothetical protein contains Pfam...    40   0.066
At4g08930.1  68417.m01470 thioredoxin-related contains weak ...    40   0.066
At3g27520.1  68416.m03440 expressed protein                        40   0.066
>At5g66675.1 68418.m08405 expressed protein 
          Length = 1823

 Score = 3600 bits (1816), Expect = 0.0
 Identities = 1823/1824 (99%), Gaps = 1/1824 (0%)
 Strand = Plus / Plus

                                                                        
Query: 20   gggaaaatcaaagagaagacaagtcaaagatagaagaagcaacctcagttgtttctctcc 79
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1    gggaaaatcaaagagaagacaagtcaaagatagaagaagcaac-tcagttgtttctctcc 59

                                                                        
Query: 80   tcttcttgttccccacaccacaatccatccctctccttcaccactctctctttgactttc 139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   tcttcttgttccccacaccacaatccatccctctccttcaccactctctctttgactttc 119

                                                                        
Query: 140  agagtaactaagatttcagctcaatctcttatctcttccggatcctcatcgattttcagg 199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  agagtaactaagatttcagctcaatctcttatctcttccggatcctcatcgattttcagg 179

                                                                        
Query: 200  tacttaccgatccgatctcagttttagttccagcctcccgcaacgaaaactctgtcttga 259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  tacttaccgatccgatctcagttttagttccagcctcccgcaacgaaaactctgtcttga 239

                                                                        
Query: 260  ttctcgcactctgcttcctacagaccagatttttctcaaatcaagtaagatttctgtttc 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  ttctcgcactctgcttcctacagaccagatttttctcaaatcaagtaagatttctgtttc 299

                                                                        
Query: 320  tgtaggttcttcactagttttgtttggaaagtgtgctcaaaacactggttctggattcta 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  tgtaggttcttcactagttttgtttggaaagtgtgctcaaaacactggttctggattcta 359

                                                                        
Query: 380  tttgtcataaaagtcaacatctttttggctcttattaatcgtccctacctgagacagtcc 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360  tttgtcataaaagtcaacatctttttggctcttattaatcgtccctacctgagacagtcc 419

                                                                        
Query: 440  atgtttcttggaatgttctccaaaaccatggaagacaaatcaaattccagcaggaacaga 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  atgtttcttggaatgttctccaaaaccatggaagacaaatcaaattccagcaggaacaga 479

                                                                        
Query: 500  accaacaacactccacttcctcaacagatccgaacagacatgggttccttatactctgca 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480  accaacaacactccacttcctcaacagatccgaacagacatgggttccttatactctgca 539

                                                                        
Query: 560  gatcttactgcttacaattcagcctgtagagaagatccagatttacaatccttcgattcc 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540  gatcttactgcttacaattcagcctgtagagaagatccagatttacaatccttcgattcc 599

                                                                        
Query: 620  tctcttcaccaacgcaccaaccgggtcatcaactcgctcgcctctggtgctcaaactcgg 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600  tctcttcaccaacgcaccaaccgggtcatcaactcgctcgcctctggtgctcaaactcgg 659

                                                                        
Query: 680  tctttatcctttgacgcgctcattgaagtctcagggtgtcttcttgaaatgaaccaagaa 739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660  tctttatcctttgacgcgctcattgaagtctcagggtgtcttcttgaaatgaaccaagaa 719

                                                                        
Query: 740  gtcgttaggtttatcattgaaagcaaagaagacgtctgggacaacaaagatttgacatgt 799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  gtcgttaggtttatcattgaaagcaaagaagacgtctgggacaacaaagatttgacatgt 779

                                                                        
Query: 800  ttggtcaatgcttattttgatagtagcatcaagactttagatttctgcaatgctgttgat 859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  ttggtcaatgcttattttgatagtagcatcaagactttagatttctgcaatgctgttgat 839

                                                                        
Query: 860  aactgtgttaaacgcgcgaggataggccaaatgctcttacagtttgcgcttaagcagttt 919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  aactgtgttaaacgcgcgaggataggccaaatgctcttacagtttgcgcttaagcagttt 899

                                                                        
Query: 920  gagatggagtcatcagggagcaacaaatccgtggaaccgggtactaataagtacgcgaaa 979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  gagatggagtcatcagggagcaacaaatccgtggaaccgggtactaataagtacgcgaaa 959

                                                                        
Query: 980  actttggaagagcttaacaagtttaaggcttctggtgatccgtttgatggagatttcttc 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  actttggaagagcttaacaagtttaaggcttctggtgatccgtttgatggagatttcttc 1019

                                                                        
Query: 1040 atgctgcttgagtctgtttacgagcagcaggttatgcttctggagatacttcataagcaa 1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 atgctgcttgagtctgtttacgagcagcaggttatgcttctggagatacttcataagcaa 1079

                                                                        
Query: 1100 aagaggaagcttgataaaaagcttaagaacataaagtattggaagaaaatctcgaatgtg 1159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 aagaggaagcttgataaaaagcttaagaacataaagtattggaagaaaatctcgaatgtg 1139

                                                                        
Query: 1160 gtttttgtgactgcgtttgtctctgttttgatcttctctgttgtagcagccgctgttgct 1219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 gtttttgtgactgcgtttgtctctgttttgatcttctctgttgtagcagccgctgttgct 1199

                                                                        
Query: 1220 gcaccgccagttgtgactgcgcttgcagctgcgttagcggttccaattggatcaataggg 1279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 gcaccgccagttgtgactgcgcttgcagctgcgttagcggttccaattggatcaataggg 1259

                                                                        
Query: 1280 aaatggtgtaatcatctttggaagaagtatgaaacggctgtgaaaggacagaaagatatt 1339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 aaatggtgtaatcatctttggaagaagtatgaaacggctgtgaaaggacagaaagatatt 1319

                                                                        
Query: 1340 gttctgtcgatgaggattggtgcttatgttaccatgaaagacatggataacattcgagta 1399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 gttctgtcgatgaggattggtgcttatgttaccatgaaagacatggataacattcgagta 1379

                                                                        
Query: 1400 catgtagataagttgaagattgagatggaatcgatgatgcaaaaggttgattttgcactc 1459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 catgtagataagttgaagattgagatggaatcgatgatgcaaaaggttgattttgcactc 1439

                                                                        
Query: 1460 aaggagaaagaagaagaagtggctgtgaggctttcgatgcacgagatcagcaagaagttt 1519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 aaggagaaagaagaagaagtggctgtgaggctttcgatgcacgagatcagcaagaagttt 1499

                                                                        
Query: 1520 gatgttttcacagagagaatcgaggaagtgggtgataacgcgactaagtgtagcaaaaat 1579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 gatgttttcacagagagaatcgaggaagtgggtgataacgcgactaagtgtagcaaaaat 1559

                                                                        
Query: 1580 atcacattggcgagaacaatcgttctgaggcacattcttagcttcccctcaagttcagat 1639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1560 atcacattggcgagaacaatcgttctgaggcacattcttagcttcccctcaagttcagat 1619

                                                                        
Query: 1640 tcagggcaaggaaacttgattgaggctatcacattgtgagagatagatacatagcataaa 1699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 tcagggcaaggaaacttgattgaggctatcacattgtgagagatagatacatagcataaa 1679

                                                                        
Query: 1700 ctggtggtttttgagaagaggttctgtggtatgtcacataacgcttatataatgttatgt 1759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1680 ctggtggtttttgagaagaggttctgtggtatgtcacataacgcttatataatgttatgt 1739

                                                                        
Query: 1760 gtaacagctcttgtatacatctgtatctgtttagcacagcataatgtattactcaattgg 1819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1740 gtaacagctcttgtatacatctgtatctgtttagcacagcataatgtattactcaattgg 1799

                                    
Query: 1820 aaataaaattcatagtctatatta 1843
            ||||||||||||||||||||||||
Sbjct: 1800 aaataaaattcatagtctatatta 1823
>At2g18630.1 68415.m02169 expressed protein unusual splice site at second intron;
            GA instead of conserved GT at donor site; similar to
            At14a GI:11994571 and GI:11994573 [Arabidopsis thaliana]
          Length = 1663

 Score = 87.7 bits (44), Expect = 3e-16
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1151 tcgaatgtggtttttgtgactgcgtttgtctctgttttgatcttctctgttgtagcagcc 1210
            |||||| |||| |||||||||||||||||||||||  | |||||||| || || ||||||
Sbjct: 1008 tcgaatatggtgtttgtgactgcgtttgtctctgtgcttatcttctcggtggttgcagcc 1067

                                    
Query: 1211 gctgttgctgcaccgccagttgtg 1234
            ||||| ||||||||||| ||||||
Sbjct: 1068 gctgtggctgcaccgcctgttgtg 1091
>At5g66670.1 68418.m08404 hypothetical protein contains Pfam:PF05055: Protein of
           unknown function (DUF677)
          Length = 1227

 Score = 40.1 bits (20), Expect = 0.066
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 752 atcattgaaagcaaagaaga 771
           ||||||||||||||||||||
Sbjct: 313 atcattgaaagcaaagaaga 332
>At4g08930.1 68417.m01470 thioredoxin-related contains weak similarity to
            Swiss-Prot:Q39239 thioredoxin H-type 4 (TRX-H-4).
            [Mouse-ear cress]
          Length = 1344

 Score = 40.1 bits (20), Expect = 0.066
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1463 gagaaagaagaagaagtggc 1482
            ||||||||||||||||||||
Sbjct: 69   gagaaagaagaagaagtggc 50
>At3g27520.1 68416.m03440 expressed protein
          Length = 999

 Score = 40.1 bits (20), Expect = 0.066
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 607 atccttcgattcctctcttc 626
           ||||||||||||||||||||
Sbjct: 238 atccttcgattcctctcttc 219
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,516
Number of Sequences: 29161
Number of extensions: 80516
Number of successful extensions: 2096
Number of sequences better than 10.0: 49
length of query: 1847
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1829
effective length of database: 43,533,334
effective search space: 79622467886
effective search space used: 79622467886
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)