BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.086.Contig1
(1847 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66675.1 68418.m08405 expressed protein 3600 0.0
At2g18630.1 68415.m02169 expressed protein unusual splice s... 88 3e-16
At5g66670.1 68418.m08404 hypothetical protein contains Pfam... 40 0.066
At4g08930.1 68417.m01470 thioredoxin-related contains weak ... 40 0.066
At3g27520.1 68416.m03440 expressed protein 40 0.066
>At5g66675.1 68418.m08405 expressed protein
Length = 1823
Score = 3600 bits (1816), Expect = 0.0
Identities = 1823/1824 (99%), Gaps = 1/1824 (0%)
Strand = Plus / Plus
Query: 20 gggaaaatcaaagagaagacaagtcaaagatagaagaagcaacctcagttgtttctctcc 79
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 gggaaaatcaaagagaagacaagtcaaagatagaagaagcaac-tcagttgtttctctcc 59
Query: 80 tcttcttgttccccacaccacaatccatccctctccttcaccactctctctttgactttc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tcttcttgttccccacaccacaatccatccctctccttcaccactctctctttgactttc 119
Query: 140 agagtaactaagatttcagctcaatctcttatctcttccggatcctcatcgattttcagg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agagtaactaagatttcagctcaatctcttatctcttccggatcctcatcgattttcagg 179
Query: 200 tacttaccgatccgatctcagttttagttccagcctcccgcaacgaaaactctgtcttga 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tacttaccgatccgatctcagttttagttccagcctcccgcaacgaaaactctgtcttga 239
Query: 260 ttctcgcactctgcttcctacagaccagatttttctcaaatcaagtaagatttctgtttc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttctcgcactctgcttcctacagaccagatttttctcaaatcaagtaagatttctgtttc 299
Query: 320 tgtaggttcttcactagttttgtttggaaagtgtgctcaaaacactggttctggattcta 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtaggttcttcactagttttgtttggaaagtgtgctcaaaacactggttctggattcta 359
Query: 380 tttgtcataaaagtcaacatctttttggctcttattaatcgtccctacctgagacagtcc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tttgtcataaaagtcaacatctttttggctcttattaatcgtccctacctgagacagtcc 419
Query: 440 atgtttcttggaatgttctccaaaaccatggaagacaaatcaaattccagcaggaacaga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atgtttcttggaatgttctccaaaaccatggaagacaaatcaaattccagcaggaacaga 479
Query: 500 accaacaacactccacttcctcaacagatccgaacagacatgggttccttatactctgca 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 accaacaacactccacttcctcaacagatccgaacagacatgggttccttatactctgca 539
Query: 560 gatcttactgcttacaattcagcctgtagagaagatccagatttacaatccttcgattcc 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gatcttactgcttacaattcagcctgtagagaagatccagatttacaatccttcgattcc 599
Query: 620 tctcttcaccaacgcaccaaccgggtcatcaactcgctcgcctctggtgctcaaactcgg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tctcttcaccaacgcaccaaccgggtcatcaactcgctcgcctctggtgctcaaactcgg 659
Query: 680 tctttatcctttgacgcgctcattgaagtctcagggtgtcttcttgaaatgaaccaagaa 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tctttatcctttgacgcgctcattgaagtctcagggtgtcttcttgaaatgaaccaagaa 719
Query: 740 gtcgttaggtttatcattgaaagcaaagaagacgtctgggacaacaaagatttgacatgt 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gtcgttaggtttatcattgaaagcaaagaagacgtctgggacaacaaagatttgacatgt 779
Query: 800 ttggtcaatgcttattttgatagtagcatcaagactttagatttctgcaatgctgttgat 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttggtcaatgcttattttgatagtagcatcaagactttagatttctgcaatgctgttgat 839
Query: 860 aactgtgttaaacgcgcgaggataggccaaatgctcttacagtttgcgcttaagcagttt 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aactgtgttaaacgcgcgaggataggccaaatgctcttacagtttgcgcttaagcagttt 899
Query: 920 gagatggagtcatcagggagcaacaaatccgtggaaccgggtactaataagtacgcgaaa 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gagatggagtcatcagggagcaacaaatccgtggaaccgggtactaataagtacgcgaaa 959
Query: 980 actttggaagagcttaacaagtttaaggcttctggtgatccgtttgatggagatttcttc 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 actttggaagagcttaacaagtttaaggcttctggtgatccgtttgatggagatttcttc 1019
Query: 1040 atgctgcttgagtctgtttacgagcagcaggttatgcttctggagatacttcataagcaa 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 atgctgcttgagtctgtttacgagcagcaggttatgcttctggagatacttcataagcaa 1079
Query: 1100 aagaggaagcttgataaaaagcttaagaacataaagtattggaagaaaatctcgaatgtg 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 aagaggaagcttgataaaaagcttaagaacataaagtattggaagaaaatctcgaatgtg 1139
Query: 1160 gtttttgtgactgcgtttgtctctgttttgatcttctctgttgtagcagccgctgttgct 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 gtttttgtgactgcgtttgtctctgttttgatcttctctgttgtagcagccgctgttgct 1199
Query: 1220 gcaccgccagttgtgactgcgcttgcagctgcgttagcggttccaattggatcaataggg 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 gcaccgccagttgtgactgcgcttgcagctgcgttagcggttccaattggatcaataggg 1259
Query: 1280 aaatggtgtaatcatctttggaagaagtatgaaacggctgtgaaaggacagaaagatatt 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 aaatggtgtaatcatctttggaagaagtatgaaacggctgtgaaaggacagaaagatatt 1319
Query: 1340 gttctgtcgatgaggattggtgcttatgttaccatgaaagacatggataacattcgagta 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 gttctgtcgatgaggattggtgcttatgttaccatgaaagacatggataacattcgagta 1379
Query: 1400 catgtagataagttgaagattgagatggaatcgatgatgcaaaaggttgattttgcactc 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 catgtagataagttgaagattgagatggaatcgatgatgcaaaaggttgattttgcactc 1439
Query: 1460 aaggagaaagaagaagaagtggctgtgaggctttcgatgcacgagatcagcaagaagttt 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 aaggagaaagaagaagaagtggctgtgaggctttcgatgcacgagatcagcaagaagttt 1499
Query: 1520 gatgttttcacagagagaatcgaggaagtgggtgataacgcgactaagtgtagcaaaaat 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 gatgttttcacagagagaatcgaggaagtgggtgataacgcgactaagtgtagcaaaaat 1559
Query: 1580 atcacattggcgagaacaatcgttctgaggcacattcttagcttcccctcaagttcagat 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1560 atcacattggcgagaacaatcgttctgaggcacattcttagcttcccctcaagttcagat 1619
Query: 1640 tcagggcaaggaaacttgattgaggctatcacattgtgagagatagatacatagcataaa 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 tcagggcaaggaaacttgattgaggctatcacattgtgagagatagatacatagcataaa 1679
Query: 1700 ctggtggtttttgagaagaggttctgtggtatgtcacataacgcttatataatgttatgt 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1680 ctggtggtttttgagaagaggttctgtggtatgtcacataacgcttatataatgttatgt 1739
Query: 1760 gtaacagctcttgtatacatctgtatctgtttagcacagcataatgtattactcaattgg 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1740 gtaacagctcttgtatacatctgtatctgtttagcacagcataatgtattactcaattgg 1799
Query: 1820 aaataaaattcatagtctatatta 1843
||||||||||||||||||||||||
Sbjct: 1800 aaataaaattcatagtctatatta 1823
>At2g18630.1 68415.m02169 expressed protein unusual splice site at second intron;
GA instead of conserved GT at donor site; similar to
At14a GI:11994571 and GI:11994573 [Arabidopsis thaliana]
Length = 1663
Score = 87.7 bits (44), Expect = 3e-16
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 1151 tcgaatgtggtttttgtgactgcgtttgtctctgttttgatcttctctgttgtagcagcc 1210
|||||| |||| ||||||||||||||||||||||| | |||||||| || || ||||||
Sbjct: 1008 tcgaatatggtgtttgtgactgcgtttgtctctgtgcttatcttctcggtggttgcagcc 1067
Query: 1211 gctgttgctgcaccgccagttgtg 1234
||||| ||||||||||| ||||||
Sbjct: 1068 gctgtggctgcaccgcctgttgtg 1091
>At5g66670.1 68418.m08404 hypothetical protein contains Pfam:PF05055: Protein of
unknown function (DUF677)
Length = 1227
Score = 40.1 bits (20), Expect = 0.066
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 752 atcattgaaagcaaagaaga 771
||||||||||||||||||||
Sbjct: 313 atcattgaaagcaaagaaga 332
>At4g08930.1 68417.m01470 thioredoxin-related contains weak similarity to
Swiss-Prot:Q39239 thioredoxin H-type 4 (TRX-H-4).
[Mouse-ear cress]
Length = 1344
Score = 40.1 bits (20), Expect = 0.066
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1463 gagaaagaagaagaagtggc 1482
||||||||||||||||||||
Sbjct: 69 gagaaagaagaagaagtggc 50
>At3g27520.1 68416.m03440 expressed protein
Length = 999
Score = 40.1 bits (20), Expect = 0.066
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 607 atccttcgattcctctcttc 626
||||||||||||||||||||
Sbjct: 238 atccttcgattcctctcttc 219
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,516
Number of Sequences: 29161
Number of extensions: 80516
Number of successful extensions: 2096
Number of sequences better than 10.0: 49
length of query: 1847
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1829
effective length of database: 43,533,334
effective search space: 79622467886
effective search space used: 79622467886
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)