BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.008.Contig1
         (457 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16444.1  68417.m02490 expressed protein                       688   0.0  
At4g11270.1  68417.m01823 transducin family protein / WD-40 ...    40   0.016
At2g34540.1  68415.m04243 expressed protein                        38   0.063
At4g26080.1  68417.m03755 protein phosphatase 2C ABI1 / PP2C...    34   0.98 
At3g14240.1  68416.m01803 subtilase family protein contains ...    34   0.98 

>At4g16444.1 68417.m02490 expressed protein
          Length = 994

 Score =  688 bits (347), Expect = 0.0
 Identities = 404/418 (96%), Gaps = 5/418 (1%)
 Strand = Plus / Plus

                                                                       
Query: 40  aagggtctccttcctccgaaggttgtgatatacctaatcctgggaattggtgcttctgga 99
           |||||||| ||| || ||||||||||||||||||||||| ||| | |  |||||||||||
Sbjct: 424 aagggtctgcttgcttcgaaggttgtgatatacctaatcttggtatt--gtgcttctgga 481

                                                                       
Query: 100 ggaccccaattgccnattatccgctaaagcaacttgttcaacccgttgggactttgttat 159
           |||| ||||||||| |||||| ||||| |||||||||||||||  |||||||||||||||
Sbjct: 482 ggactccaattgcc-attatc-gctaa-gcaacttgttcaaccgtttgggactttgttat 538

                                                                       
Query: 160 cttggggaacaggaggtcacatgacaggccatgtaatggtcgggatcataccgtggctca 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttggggaacaggaggtcacatgacaggccatgtaatggtcgggatcataccgtggctca 598

                                                                       
Query: 220 tactctcaaacagagtgagcaaatatgtgtgtaggttcgtggagttctaaatcgcatccc 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tactctcaaacagagtgagcaaatatgtgtgtaggttcgtggagttctaaatcgcatccc 658

                                                                       
Query: 280 tgaaaagagtgaagattggatggtttttgagttcaaagttgtagccttttaggagacact 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tgaaaagagtgaagattggatggtttttgagttcaaagttgtagccttttaggagacact 718

                                                                       
Query: 340 tgtggcagaaattgtgcttctctttttgttcctaatcttccttaacaatgtatatttata 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tgtggcagaaattgtgcttctctttttgttcctaatcttccttaacaatgtatatttata 778

                                                                     
Query: 400 tgactctttttctctggttgtttgttggattttaccaataacaagtagttcgtttttg 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tgactctttttctctggttgtttgttggattttaccaataacaagtagttcgtttttg 836



>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat family protein
            contains 5 WD-40 repeats (PF00400); related to TGF-beta
            resistance-associated protein TRAG (GI:15624071) {Mus
            musculus}; similar to beta-transducin repeats containing
            protein - Homo sapiens,PID:e1284220; 3' EST no_NP:TC8031
          Length = 4515

 Score = 40.1 bits (20), Expect = 0.016
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  gctaaagcaacttgttcaac 141
            ||||||||||||||||||||
Sbjct: 4230 gctaaagcaacttgttcaac 4249



>At2g34540.1 68415.m04243 expressed protein
          Length = 1216

 Score = 38.2 bits (19), Expect = 0.063
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 288 gtgaagattggatggtttttgag 310
           |||||||||| ||||||||||||
Sbjct: 531 gtgaagattgaatggtttttgag 509



>At4g26080.1 68417.m03755 protein phosphatase 2C ABI1 / PP2C ABI1 / abscisic
           acid-insensitive 1 (ABI1) nearly identical to SP|P49597
           Protein phosphatase 2C ABI1 (EC 3.1.3.16) (PP2C)
           (Abscisic acid- insensitive 1) {Arabidopsis thaliana}
          Length = 2031

 Score = 34.2 bits (17), Expect = 0.98
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 404 tctttttctctggttgt 420
           |||||||||||||||||
Sbjct: 439 tctttttctctggttgt 423



>At3g14240.1 68416.m01803 subtilase family protein contains similarity to SBT1
            GI:1771160 from [Lycopersicon esculentum]
          Length = 2645

 Score = 34.2 bits (17), Expect = 0.98
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 86   ttggtgcttctggagga 102
            |||||||||||||||||
Sbjct: 1502 ttggtgcttctggagga 1518



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,914
Number of Sequences: 29161
Number of extensions: 12914
Number of successful extensions: 1030
Number of sequences better than 10.0: 22
length of query: 457
length of database: 44,058,232
effective HSP length: 17
effective length of query: 440
effective length of database: 43,562,495
effective search space: 19167497800
effective search space used: 19167497800
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)