BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.007.Contig1
         (428 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15955.1  68417.m02422 epoxide hydrolase-related similar ...   745   0.0  
At4g28670.1  68417.m04097 protein kinase family protein cont...    38   0.058
At5g17030.1  68418.m01996 UDP-glucoronosyl/UDP-glucosyl tran...    36   0.23 
At4g02230.1  68417.m00302 60S ribosomal protein L19 (RPL19C)...    36   0.23 
At3g43900.1  68416.m04699 hypothetical protein predicted pro...    34   0.91 

>At4g15955.1 68417.m02422 epoxide hydrolase-related similar to epoxide hydrolase
           GI:1109600 from [Arabidopsis thaliana]
          Length = 963

 Score =  745 bits (376), Expect = 0.0
 Identities = 395/400 (98%), Gaps = 1/400 (0%)
 Strand = Plus / Plus

                                                                       
Query: 27  ggagctgatggggtcactatcaaaccgctaaagtgaaagttccggttaagttcataatcg 86
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 563 ggagctgatggggtcactatcaaac-gctaaagtgaaagttccggttaagttcataatcg 621

                                                                       
Query: 87  gcgaccaagatctgacatatcacattcccggtagcaagaagtacatccacgatggccggt 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcgaccaagatctgacatatcacattcccggtagcaagaagtacatccacgatggccggt 681

                                                                       
Query: 147 ttaagagccatgtccccttgttggacgaagttgtggtaattaaaggcctcggtcatttta 206
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 682 ttaagagccatgtcccgttgttggacgaagttgtggtaattaaaggcgtcggtcatttta 741

                                                                       
Query: 207 tccacgaggaaaggcctgacgagataagtaaacacattcacgactattttcttacttttt 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tccacgaggaaaggcctgacgagataagtaaacacattcacgactattttcttacttttt 801

                                                                       
Query: 267 agagctaaattgtatttagaaatcacaaacaaaaaggaataaagagttatatacatcttc 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 agagctaaattgtatttagaaatcacaaacaaaaaggaataaagagttatatacatcttc 861

                                                                       
Query: 327 cttatcatgtgaaagggcagaccaaataaaacgctttatttgtcacaaacgaaaacgatt 386
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 862 cttatcatgtgaaagggcagagcaaataaaacgctttatttgtcacaaacgaaaacgatt 921

                                                   
Query: 387 aaagccttatatttcttccttctatagaaatcgttttctt 426
           ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 922 aaagcgttatatttcttccttctatagaaatcgttttctt 961



>At4g28670.1 68417.m04097 protein kinase family protein contains Pfam domain,
            PF00069: Protein kinase domain
          Length = 1878

 Score = 38.2 bits (19), Expect = 0.058
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 164  ttgttggacgaagttgtgg 182
            |||||||||||||||||||
Sbjct: 1792 ttgttggacgaagttgtgg 1774



>At5g17030.1 68418.m01996 UDP-glucoronosyl/UDP-glucosyl transferase family protein
            similar to UDP glucose:flavonoid 3-o-glucosyltransferase
            from Vitis vinifera, EMBL:AF000372
          Length = 1460

 Score = 36.2 bits (18), Expect = 0.23
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 164  ttgttggacgaagttgtg 181
            ||||||||||||||||||
Sbjct: 1366 ttgttggacgaagttgtg 1383



>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar to L19 from
           several species
          Length = 816

 Score = 36.2 bits (18), Expect = 0.23
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 354 aaaacgctttatttgtcacaaa 375
           ||||| ||||||||||||||||
Sbjct: 724 aaaactctttatttgtcacaaa 745



>At3g43900.1 68416.m04699 hypothetical protein predicted protein, Arabidopsis
           thaliana
          Length = 255

 Score = 34.2 bits (17), Expect = 0.91
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 384 attaaagccttatattt 400
           |||||||||||||||||
Sbjct: 80  attaaagccttatattt 64



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,886
Number of Sequences: 29161
Number of extensions: 10886
Number of successful extensions: 792
Number of sequences better than 10.0: 11
length of query: 428
length of database: 44,058,232
effective HSP length: 17
effective length of query: 411
effective length of database: 43,562,495
effective search space: 17904185445
effective search space used: 17904185445
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)