BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.006.Contig1
(766 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54826.1 68416.m06072 zinc finger (DNL type) protein-rel... 1509 0.0
At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl tran... 34 1.7
At4g29530.1 68417.m04212 2,3-diketo-5-methylthio-1-phosphop... 34 1.7
At4g25580.1 68417.m03686 stress-responsive protein-related ... 34 1.7
At5g57870.2 68418.m07239 eukaryotic translation initiation ... 32 6.6
>At3g54826.1 68416.m06072 zinc finger (DNL type) protein-related contains weak
hit to PF05180: DNL zinc finger
Length = 766
Score = 1509 bits (761), Expect = 0.0
Identities = 761/761 (100%)
Strand = Plus / Plus
Query: 6 gtcgagttcctcctctccctcaggttgtcaatggccgctaggttacttgctttgagacgc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gtcgagttcctcctctccctcaggttgtcaatggccgctaggttacttgctttgagacgc 65
Query: 66 gctttgtctcttttcagcaaccaacaacatcgttttcctttgtctcaagtctcaacagag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gctttgtctcttttcagcaaccaacaacatcgttttcctttgtctcaagtctcaacagag 125
Query: 126 cagttgtcgctatcaaactcactcttcagcagaagtcatgtttatggaagattatttcag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cagttgtcgctatcaaactcactcttcagcagaagtcatgtttatggaagattatttcag 185
Query: 186 agacagttatctgtaatccgtgaggcaaatgaagcttctgtaaccaatgtctgcaactcg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 agacagttatctgtaatccgtgaggcaaatgaagcttctgtaaccaatgtctgcaactcg 245
Query: 246 tcaaactctgctactgaatcggccaaagttccctcccctgcgacgccctctgaggaaatg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcaaactctgctactgaatcggccaaagttccctcccctgcgacgccctctgaggaaatg 305
Query: 306 atggtgaagtacaagtcccagttaaaaataaacccgaggcatgacttcatgatggtcttc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atggtgaagtacaagtcccagttaaaaataaacccgaggcatgacttcatgatggtcttc 365
Query: 366 acttgcaaggtctgtgatacaagatctatgaagatggcgagccgagaatcatatgaaaac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acttgcaaggtctgtgatacaagatctatgaagatggcgagccgagaatcatatgaaaac 425
Query: 426 ggcgttgtggtggtacgatgtggagggtgtgataatctacatttgattgcagaccgtcgt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggcgttgtggtggtacgatgtggagggtgtgataatctacatttgattgcagaccgtcgt 485
Query: 486 ggttggtttggagaaccaggaagcgtggaggacttccttgcttctcaaggggaagaattc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggttggtttggagaaccaggaagcgtggaggacttccttgcttctcaaggggaagaattc 545
Query: 546 aagaaaggatccatggattctcttaacctaactcctgaagatttagctggaggaaagatt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aagaaaggatccatggattctcttaacctaactcctgaagatttagctggaggaaagatt 605
Query: 606 tctactgaataaggagtgatcttctttgcttttgctacttaaccattatggaacagaact 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tctactgaataaggagtgatcttctttgcttttgctacttaaccattatggaacagaact 665
Query: 666 tcaccttatgttccagtattataattgtttcttgtagttcactgtttggtaacatttaaa 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcaccttatgttccagtattataattgtttcttgtagttcactgtttggtaacatttaaa 725
Query: 726 tgcagaagatgtttaatacaattatgtgtttggaatgttcc 766
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tgcagaagatgtttaatacaattatgtgtttggaatgttcc 766
>At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 1651
Score = 34.2 bits (17), Expect = 1.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 137 atcaaactcactcttca 153
|||||||||||||||||
Sbjct: 1099 atcaaactcactcttca 1083
>At4g29530.1 68417.m04212 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
family contains TIGRfam TIGR01489:
2,3-diketo-5-methylthio-1-phosphopentane phosphatase
Length = 967
Score = 34.2 bits (17), Expect = 1.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 578 tcctgaagatttagctg 594
|||||||||||||||||
Sbjct: 346 tcctgaagatttagctg 330
>At4g25580.1 68417.m03686 stress-responsive protein-related contains weak
similarity to Low-temperature-induced 65 kDa protein
(Desiccation-responsive protein 29B) (Swiss-Prot:Q04980)
[Arabidopsis thaliana]
Length = 2154
Score = 34.2 bits (17), Expect = 1.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 622 tgatcttctttgctttt 638
|||||||||||||||||
Sbjct: 276 tgatcttctttgctttt 260
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor 4F, putative /
eIF-4F, putative similar to SP|Q03387 Eukaryotic
initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F
P82-34) {Triticum aestivum}; contains Pfam profiles
PF02854: MIF4G domain, PF02847: MA3 domain
Length = 2936
Score = 32.2 bits (16), Expect = 6.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 107 gtctcaagtctcaaca 122
||||||||||||||||
Sbjct: 2875 gtctcaagtctcaaca 2860
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,603
Number of Sequences: 29161
Number of extensions: 25603
Number of successful extensions: 559
Number of sequences better than 10.0: 38
length of query: 766
length of database: 44,058,232
effective HSP length: 17
effective length of query: 749
effective length of database: 43,562,495
effective search space: 32628308755
effective search space used: 32628308755
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)