BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.005.Contig1
(528 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_975609.1| Transposase IS1296LL (ORFB; extended) [Myc... 33 2.8
ref|NP_975815.1| Transposase IS1296HV (ORFB) [Mycoplasma my... 33 2.8
ref|NP_975642.1| Transposase IS1296AB_B (ORFB) [Mycoplasma ... 33 2.8
ref|NP_975177.1| Transposase IS1296UK (ORFB) [Mycoplasma my... 33 2.8
ref|NP_975142.1| Transposase IS1296MP (ORFB) [Mycoplasma my... 33 2.8
ref|NP_975026.1| transposase IS1296SQ (ORFB) [Mycoplasma my... 33 2.8
ref|NP_975214.1| Transposase IS1296JI (ORFB) [Mycoplasma my... 33 2.8
ref|NP_975873.1| Transposase IS1296DS (ORFB) [Mycoplasma my... 33 2.8
ref|NP_975245.1| Transposase IS1296OD (ORFB) [Mycoplasma my... 33 2.8
>ref|NP_975609.1| Transposase IS1296LL (ORFB; extended) [Mycoplasma mycoides subsp.
mycoides SC str. PG1]|gi|42492656|emb|CAE77251.1|
Transposase IS1296LL (ORFB; extended) [Mycoplasma
mycoides subsp. mycoides SC]
Length = 291
Score = 33.1 bits (74), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 333 LSWASSYKLNLLVLWLSNRDACLDNLILENLMGL 434
+SWA + N + +S + CLDN I+EN GL
Sbjct: 197 ISWAKKLEENNITQSMSRKGNCLDNAIIENFFGL 230
>ref|NP_975815.1| Transposase IS1296HV (ORFB) [Mycoplasma mycoides subsp. mycoides SC
str. PG1]|gi|42492862|emb|CAE77457.1| Transposase
IS1296HV (ORFB) [Mycoplasma mycoides subsp. mycoides SC]
Length = 286
Score = 33.1 bits (74), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 333 LSWASSYKLNLLVLWLSNRDACLDNLILENLMGL 434
+SWA + N + +S + CLDN I+EN GL
Sbjct: 197 ISWAKKLEENNITQSMSRKGNCLDNAIIENFFGL 230
>ref|NP_975642.1| Transposase IS1296AB_B (ORFB) [Mycoplasma mycoides subsp. mycoides
SC str. PG1]|gi|42492689|emb|CAE77284.1| Transposase
IS1296AB_B (ORFB) [Mycoplasma mycoides subsp. mycoides
SC]
Length = 282
Score = 33.1 bits (74), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 333 LSWASSYKLNLLVLWLSNRDACLDNLILENLMGL 434
+SWA + N + +S + CLDN I+EN GL
Sbjct: 197 ISWAKKLEENNITQSMSRKGNCLDNAIIENFFGL 230
>ref|NP_975177.1| Transposase IS1296UK (ORFB) [Mycoplasma mycoides subsp. mycoides SC
str. PG1]|gi|42560788|ref|NP_975239.1| Transposase
IS1296FJ (ORFB) [Mycoplasma mycoides subsp. mycoides SC
str. PG1]|gi|42492222|emb|CAE76819.1| Transposase
IS1296UK (ORFB) [Mycoplasma mycoides subsp. mycoides
SC]|gi|42492284|emb|CAE76881.1| Transposase IS1296FJ
(ORFB) [Mycoplasma mycoides subsp. mycoides SC]
Length = 286
Score = 33.1 bits (74), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 333 LSWASSYKLNLLVLWLSNRDACLDNLILENLMGL 434
+SWA + N + +S + CLDN I+EN GL
Sbjct: 197 ISWAKKLEENNITQSMSRKGNCLDNAIIENFFGL 230
>ref|NP_975142.1| Transposase IS1296MP (ORFB) [Mycoplasma mycoides subsp. mycoides SC
str. PG1]|gi|42561417|ref|NP_975868.1| Transposase
IS1296AC_R (ORFB) [Mycoplasma mycoides subsp. mycoides
SC str. PG1]|gi|42492187|emb|CAE76784.1| Transposase
IS1296MP (ORFB) [Mycoplasma mycoides subsp. mycoides
SC]|gi|42492915|emb|CAE77510.1| Transposase IS1296AC_R
(ORFB) [Mycoplasma mycoides subsp. mycoides SC]
Length = 286
Score = 33.1 bits (74), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 333 LSWASSYKLNLLVLWLSNRDACLDNLILENLMGL 434
+SWA + N + +S + CLDN I+EN GL
Sbjct: 197 ISWAKKLEENNITQSMSRKGNCLDNAIIENFFGL 230
>ref|NP_975026.1| transposase IS1296SQ (ORFB) [Mycoplasma mycoides subsp. mycoides SC
str. PG1]|gi|42492071|emb|CAE76668.1| transposase
IS1296SQ (ORFB) [Mycoplasma mycoides subsp. mycoides SC]
Length = 286
Score = 33.1 bits (74), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 333 LSWASSYKLNLLVLWLSNRDACLDNLILENLMGL 434
+SWA + N + +S + CLDN I+EN GL
Sbjct: 197 ISWAKKLEENNITQSMSRKGNCLDNAIIENFFGL 230
>ref|NP_975214.1| Transposase IS1296JI (ORFB) [Mycoplasma mycoides subsp. mycoides SC
str. PG1]|gi|42492259|emb|CAE76856.1| Transposase
IS1296JI (ORFB) [Mycoplasma mycoides subsp. mycoides SC]
Length = 286
Score = 33.1 bits (74), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 333 LSWASSYKLNLLVLWLSNRDACLDNLILENLMGL 434
+SWA + N + +S + CLDN I+EN GL
Sbjct: 197 ISWAKKLEENNITQSMSRKGNCLDNAIIENFFGL 230
>ref|NP_975873.1| Transposase IS1296DS (ORFB) [Mycoplasma mycoides subsp. mycoides SC
str. PG1]|gi|42492920|emb|CAE77515.1| Transposase
IS1296DS (ORFB) [Mycoplasma mycoides subsp. mycoides SC]
Length = 286
Score = 33.1 bits (74), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 333 LSWASSYKLNLLVLWLSNRDACLDNLILENLMGL 434
+SWA + N + +S + CLDN I+EN GL
Sbjct: 197 ISWAKKLEENNITQSMSRKGNCLDNAIIENFFGL 230
>ref|NP_975245.1| Transposase IS1296OD (ORFB) [Mycoplasma mycoides subsp. mycoides SC
str. PG1]|gi|42492290|emb|CAE76887.1| Transposase
IS1296OD (ORFB) [Mycoplasma mycoides subsp. mycoides SC]
Length = 286
Score = 33.1 bits (74), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 333 LSWASSYKLNLLVLWLSNRDACLDNLILENLMGL 434
+SWA + N + +S + CLDN I+EN GL
Sbjct: 197 ISWAKKLEENNITQSMSRKGNCLDNAIIENFFGL 230
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 117
effective length of database: 407,963,052
effective search space used: 23661857016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)