BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.004.Contig1
(474 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02555.1 68416.m00245 expressed protein 398 e-110
At5g16110.1 68418.m01882 expressed protein hypothetical pro... 52 4e-06
At5g20190.1 68418.m02405 expressed protein 42 0.004
At3g12550.1 68416.m01562 XH/XS domain-containing protein / ... 42 0.004
At3g01530.1 68416.m00081 myb family transcription factor (M... 40 0.016
>At3g02555.1 68416.m00245 expressed protein
Length = 903
Score = 398 bits (201), Expect = e-110
Identities = 211/213 (99%), Gaps = 1/213 (0%)
Strand = Plus / Plus
Query: 1 gggtttgattgcttgaacagggaccgcccaaactcaagtatccctgccatggcctagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gggtttgattgcttgaacagggaccgcccaaactcaagtatccctgccatggcctagaaa 587
Query: 61 gaagaagaaggaacaaagaggattcacaaagtgtacataaaatccagactcaaagactcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaagaagaaggaacaaagaggattcacaaagtgtacataaaatccagactcaaagactcc 647
Query: 121 attttttgaagaagtatatatagttttgcagaagaagaggaaaaggaagattaacgatcg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 attttttgaagaagtatatatagttttgcagaagaagaggaaaaggaagattaacgatc- 706
Query: 181 gctcaagcttttaccccagttttctgtgattat 213
||||||||||||||| |||||||||||||||||
Sbjct: 707 gctcaagcttttaccgcagttttctgtgattat 739
>At5g16110.1 68418.m01882 expressed protein hypothetical protein T26J14.6 -
Arabidopsis thaliana, EMBL:AC011915
Length = 1474
Score = 52.0 bits (26), Expect = 4e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 4 tttgattgcttgaacagggaccgcccaaactcaagtatccctgccatggc 53
||||||||||||||| | ||||| | |||||| || ||||||||||||||
Sbjct: 854 tttgattgcttgaaccgtgaccgtcaaaactcgagcatccctgccatggc 903
>At5g20190.1 68418.m02405 expressed protein
Length = 1056
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 150 agaagaagaggaaaaggaaga 170
|||||||||||||||||||||
Sbjct: 771 agaagaagaggaaaaggaaga 791
>At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zinc finger
domain-containing protein contains Pfam domains PF03469:
XH domain, PF03468: XS domain and PF03470: XS zinc
finger domain
Length = 1908
Score = 42.1 bits (21), Expect = 0.004
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 132 aagtatatatagttttgcagaagaagagg 160
|||||| ||||| ||||||||||||||||
Sbjct: 732 aagtatttataggtttgcagaagaagagg 760
>At3g01530.1 68416.m00081 myb family transcription factor (MYB57) contains PFAM
profile: myb DNA binding domain PF00249
Length = 1507
Score = 40.1 bits (20), Expect = 0.016
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 agaaagaagaagaaggaaca 75
||||||||||||||||||||
Sbjct: 706 agaaagaagaagaaggaaca 725
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,491
Number of Sequences: 29161
Number of extensions: 36491
Number of successful extensions: 3951
Number of sequences better than 10.0: 121
length of query: 474
length of database: 44,058,232
effective HSP length: 17
effective length of query: 457
effective length of database: 43,562,495
effective search space: 19908060215
effective search space used: 19908060215
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)