BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AK118991_RAFL21_32_I23.F
         (465 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33585.1  68415.m04116 expressed protein                       656   0.0  
At5g10070.2  68418.m01167 RNase L inhibitor protein-related ...    36   0.25 
At5g10070.1  68418.m01166 RNase L inhibitor protein-related ...    36   0.25 
At3g07700.2  68416.m00926 ABC1 family protein contains Pfam ...    36   0.25 
At3g07700.1  68416.m00925 ABC1 family protein contains Pfam ...    36   0.25 

>At2g33585.1 68415.m04116 expressed protein
          Length = 582

 Score =  656 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaagaaccttagaccagttcgtatagttgggcatcaatcaatggctagcagctggagaag 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gaagaaccttagaccagttcgtatagttgggcatcaatcaatggctagcagctggagaag 311

                                                                       
Query: 63  atcaattggaaacgtgagatctttcatcggtaattccatgggaggtcttagaggtggtca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atcaattggaaacgtgagatctttcatcggtaattccatgggaggtcttagaggtggtca 371

                                                                       
Query: 123 gagtgccgcttcttgggtcgtcgccggaactattgcttactttctctggattaagccaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gagtgccgcttcttgggtcgtcgccggaactattgcttactttctctggattaagccaga 431

                                                                       
Query: 183 acaagatcttaaaaaggaacaagaggctagggcagctcttgcaatggctgatactaatca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acaagatcttaaaaaggaacaagaggctagggcagctcttgcaatggctgatactaatca 491

                                                                       
Query: 243 atacgttgagaagaggaaaccaatcgctgaccctcaggttactggtttgatatatggaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atacgttgagaagaggaaaccaatcgctgaccctcaggttactggtttgatatatggaaa 551

                                          
Query: 303 caagaacggaactgataagtcagaagattga 333
           |||||||||||||||||||||||||||||||
Sbjct: 552 caagaacggaactgataagtcagaagattga 582



>At5g10070.2 68418.m01167 RNase L inhibitor protein-related contains Pfam
           profiles PF04034: Domain of unknown function (DUF367),
           PF04068: Possible metal-binding domain in RNase L
           inhibitor, RLI
          Length = 1071

 Score = 36.2 bits (18), Expect = 0.25
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 440 aaagatggaaactttttt 457
           ||||||||||||||||||
Sbjct: 957 aaagatggaaactttttt 940



>At5g10070.1 68418.m01166 RNase L inhibitor protein-related contains Pfam
           profiles PF04034: Domain of unknown function (DUF367),
           PF04068: Possible metal-binding domain in RNase L
           inhibitor, RLI
          Length = 1065

 Score = 36.2 bits (18), Expect = 0.25
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 440 aaagatggaaactttttt 457
           ||||||||||||||||||
Sbjct: 951 aaagatggaaactttttt 934



>At3g07700.2 68416.m00926 ABC1 family protein contains Pfam domain, PF03109: ABC1
            family
          Length = 2389

 Score = 36.2 bits (18), Expect = 0.25
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 78   gagatctttcatcggtaa 95
            ||||||||||||||||||
Sbjct: 1544 gagatctttcatcggtaa 1561



>At3g07700.1 68416.m00925 ABC1 family protein contains Pfam domain, PF03109: ABC1
            family
          Length = 2478

 Score = 36.2 bits (18), Expect = 0.25
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 78   gagatctttcatcggtaa 95
            ||||||||||||||||||
Sbjct: 1633 gagatctttcatcggtaa 1650



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,321
Number of Sequences: 29161
Number of extensions: 15321
Number of successful extensions: 1191
Number of sequences better than 10.0: 23
length of query: 465
length of database: 44,058,232
effective HSP length: 17
effective length of query: 448
effective length of database: 43,562,495
effective search space: 19515997760
effective search space used: 19515997760
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)