BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.030.Contig1
(924 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30475.1 68414.m03725 expressed protein 1816 0.0
At1g56200.1 68414.m06459 expressed protein 54 2e-06
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein f... 50 3e-05
At5g11700.1 68418.m01367 glycine-rich protein predicted pro... 48 1e-04
At3g50130.1 68416.m05480 expressed protein ; expression sup... 46 5e-04
>At1g30475.1 68414.m03725 expressed protein
Length = 923
Score = 1816 bits (916), Expect = 0.0
Identities = 923/924 (99%), Gaps = 1/924 (0%)
Strand = Plus / Plus
Query: 1 gatcgagaagcttcgaggagcaaccaaaatcccaaatttttcctcgacaaaaaatctacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatcgagaagcttcgaggagcaaccaaaatcccaaatttttcctcgacaaaaaatctacc 60
Query: 61 tgctttgatccaaatctctatgggtttttatcattaatcgaatttcaaaattgatgaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctttgatccaaatctctatgggtttttatcattaatcgaatttcaaaattgatgaatc 120
Query: 121 cataatttttttctctattcgatttatgagaaattgatttttttttttatttttctccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cataatttttttctctattcgatttatgagaaattgatttttttttttatttttctccct 180
Query: 181 tgtgaaataggttaaagattattgttttgttgctgtttgtagttatgccggtaatgaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtgaaataggttaaagattattgttttgttgctgtttgtagttatgccggtaatgaatc 240
Query: 241 catcattgtgtattggtacacaaacatcggtgtacctcgctcctcgtgagaaatctttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catcattgtgtattggtacacaaacatcggtgtacctcgctcctcgtgagaaatctttta 300
Query: 301 cgagtaatggaaactctcaaaggcgttatcctacaagcgtttctatgcaacgccagcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgagtaatggaaactctcaaaggcgttatcctacaagcgtttctatgcaacgccagcctt 360
Query: 361 ggagccaaagtaaattcccttctctccaggatgcagtgcaaccagttgtcgtctctaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggagccaaagtaaattcccttctctccaggatgcagtgcaaccagttgtcgtctctaaga 420
Query: 421 ataaaagaccagtctttgcatgtaactctgcgctgaattcaaaatgcagtcaaggacaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataaaagaccagtctttgcatgtaactctgcgctgaattcaaaatgcagtcaaggacaaa 480
Query: 481 cacagacccgttacacggcaatcaccaacaatcacacaagctcctactcatggaaaagtt 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cacaga-ccgttacacggcaatcaccaacaatcacacaagctcctactcatggaaaagtt 539
Query: 541 aaatccccaaagcttgatgacggtggaaacgggttcccacctcgggatgatggtggtggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaatccccaaagcttgatgacggtggaaacgggttcccacctcgggatgatggtggtggt 599
Query: 601 ggtggtggcggaggcggtggagggagctcttcaggtggattcttccttttcgggtttctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggtggtggcggaggcggtggagggagctcttcaggtggattcttccttttcgggtttctt 659
Query: 661 ttgttcatgggatacttgaaagatttggagggcgaacatgaaaacaaccattaaatcgga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttgttcatgggatacttgaaagatttggagggcgaacatgaaaacaaccattaaatcgga 719
Query: 721 ggaaaacatgatgcacaagcacaacagacaaatctcaagacaagtattctccaagagaaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ggaaaacatgatgcacaagcacaacagacaaatctcaagacaagtattctccaagagaaa 779
Query: 781 tctctgtatcaaaaacaatagattctagtactagcaataggcacagatttgagttgttat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tctctgtatcaaaaacaatagattctagtactagcaataggcacagatttgagttgttat 839
Query: 841 ttatgttttctctgttgggttatgaatgagattcttgttccgtgacacaaacaaagctca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ttatgttttctctgttgggttatgaatgagattcttgttccgtgacacaaacaaagctca 899
Query: 901 tcttatccaaatgtttatggaacc 924
||||||||||||||||||||||||
Sbjct: 900 tcttatccaaatgtttatggaacc 923
>At1g56200.1 68414.m06459 expressed protein
Length = 672
Score = 54.0 bits (27), Expect = 2e-06
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 569 acgggttcccacctcgggatgatggtggtggtggtggtggcggaggcggtggagg 623
||||||||||||| || |||||||| | ||||||||| || ||||| ||||||||
Sbjct: 345 acgggttcccaccgcgagatgatggagatggtggtggaggaggagggggtggagg 399
Score = 48.1 bits (24), Expect = 1e-04
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 462 aaatgcagtcaaggacaaacacagacccgttacacggcaatcaccaacaatcacacaagc 521
||||||||| ||||||||||||||| ||||||| ||| | ||||| || || ||||| ||
Sbjct: 239 aaatgcagtgaaggacaaacacaga-ccgttactcgggagtcaccgactataacacaggc 297
Query: 522 tcct 525
||||
Sbjct: 298 tcct 301
>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family protein
Length = 1949
Score = 50.1 bits (25), Expect = 3e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 592 ggtggtggtggtggtggcggaggcggtgg 620
|||||||||||||| ||||||||||||||
Sbjct: 917 ggtggtggtggtggcggcggaggcggtgg 889
>At5g11700.1 68418.m01367 glycine-rich protein predicted protein, Arabidopsis
thaliana
Length = 4731
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 591 tggtggtggtggtggtggcggagg 614
||||||||||||||||||||||||
Sbjct: 2217 tggtggtggtggtggtggcggagg 2240
>At3g50130.1 68416.m05480 expressed protein ; expression supported by MPSS
Length = 1695
Score = 46.1 bits (23), Expect = 5e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 594 tggtggtggtggtggcggaggcggtgg 620
||||||||||||||| |||||||||||
Sbjct: 51 tggtggtggtggtggaggaggcggtgg 25
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 592 ggtggtggtggtggtgg 608
|||||||||||||||||
Sbjct: 161 ggtggtggtggtggtgg 145
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 589 gatggtggtggtggtgg 605
|||||||||||||||||
Sbjct: 53 gatggtggtggtggtgg 37
Score = 34.2 bits (17), Expect = 2.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 589 gatggtggtggtggtgg 605
|||||||||||||||||
Sbjct: 89 gatggtggtggtggtgg 73
Score = 32.2 bits (16), Expect = 7.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 591 tggtggtggtggtggt 606
||||||||||||||||
Sbjct: 159 tggtggtggtggtggt 144
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,491
Number of Sequences: 29161
Number of extensions: 45491
Number of successful extensions: 2333
Number of sequences better than 10.0: 360
length of query: 924
length of database: 44,058,232
effective HSP length: 18
effective length of query: 906
effective length of database: 43,533,334
effective search space: 39441200604
effective search space used: 39441200604
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)