BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.003.Contig1
         (523 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49510.1  68414.m05549 expressed protein                      1037   0.0  
At5g40450.1  68418.m04905 expressed protein                        42   0.005
At5g66440.1  68418.m08379 expressed protein                        40   0.018
At5g66200.1  68418.m08339 armadillo/beta-catenin repeat fami...    40   0.018
At5g24470.1  68418.m02884 pseudo-response regulator 5 (APRR5...    40   0.018

>At1g49510.1 68414.m05549 expressed protein
          Length = 1118

 Score = 1037 bits (523), Expect = 0.0
 Identities = 523/523 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    cgctttgaagatctcgcctcgtcttaaggaagcggaagtaccgtggcatttgatagctat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588  cgctttgaagatctcgcctcgtcttaaggaagcggaagtaccgtggcatttgatagctat 647

                                                                        
Query: 61   gatgatgttcttcactctgattaagcttcctggaccatattacccgtattgggggcgttt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  gatgatgttcttcactctgattaagcttcctggaccatattacccgtattgggggcgttt 707

                                                                        
Query: 121  attagttccacattttgcaaatggagtattacttagagcactttggtccatgttcttttg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  attagttccacattttgcaaatggagtattacttagagcactttggtccatgttcttttg 767

                                                                        
Query: 181  gtataagaagactagaaacacatcaggaaatcctctgcagaatcacagtttggaaacaga 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768  gtataagaagactagaaacacatcaggaaatcctctgcagaatcacagtttggaaacaga 827

                                                                        
Query: 241  atgagcatcttcatcaaaaggctggtgttttaaagtgccaagtggtcactttgattagtt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828  atgagcatcttcatcaaaaggctggtgttttaaagtgccaagtggtcactttgattagtt 887

                                                                        
Query: 301  tcggggattatctggaacctcgtggagtagtgttcgagcatagataggagctttcttctt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888  tcggggattatctggaacctcgtggagtagtgttcgagcatagataggagctttcttctt 947

                                                                        
Query: 361  cttcttttctctcttcaatctcagagaagttgaggttaatgagttaacaacatcttttag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  cttcttttctctcttcaatctcagagaagttgaggttaatgagttaacaacatcttttag 1007

                                                                        
Query: 421  gccatagaattgttttgttttgtgttctcttctttggaaaattgtctcagttcttgtgaa 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 gccatagaattgttttgttttgtgttctcttctttggaaaattgtctcagttcttgtgaa 1067

                                                       
Query: 481  aaccgctattctttggatatgtatttgtatcttgagtttttgt 523
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 aaccgctattctttggatatgtatttgtatcttgagtttttgt 1110



>At5g40450.1 68418.m04905 expressed protein
          Length = 8748

 Score = 42.1 bits (21), Expect = 0.005
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 354  tcttcttcttcttttctctcttcaa 378
            |||||||||||||||||| ||||||
Sbjct: 3620 tcttcttcttcttttctcacttcaa 3596



>At5g66440.1 68418.m08379 expressed protein
          Length = 863

 Score = 40.1 bits (20), Expect = 0.018
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 352 tttcttcttcttcttttctc 371
           ||||||||||||||||||||
Sbjct: 5   tttcttcttcttcttttctc 24



>At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family protein contains
           Pfam profile: PF00514 armadillo/beta-catenin-like repeat
          Length = 2363

 Score = 40.1 bits (20), Expect = 0.018
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 353 ttcttcttcttcttttctct 372
           ||||||||||||||||||||
Sbjct: 40  ttcttcttcttcttttctct 59



>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) identical to
           pseudo-response regulator 5 GI:10281006 from
           [Arabidopsis thaliana]
          Length = 2226

 Score = 40.1 bits (20), Expect = 0.018
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 ggagctttcttcttcttctt 366
           ||||||||||||||||||||
Sbjct: 261 ggagctttcttcttcttctt 280



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,725
Number of Sequences: 29161
Number of extensions: 39725
Number of successful extensions: 8660
Number of sequences better than 10.0: 413
length of query: 523
length of database: 44,058,232
effective HSP length: 17
effective length of query: 506
effective length of database: 43,562,495
effective search space: 22042622470
effective search space used: 22042622470
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)