BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= F13870.x
(323 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49510.1 68414.m05549 expressed protein 611 e-174
At5g40450.1 68418.m04905 expressed protein 42 0.003
At5g66440.1 68418.m08379 expressed protein 40 0.011
At5g66200.1 68418.m08339 armadillo/beta-catenin repeat fami... 40 0.011
At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5... 40 0.011
>At1g49510.1 68414.m05549 expressed protein
Length = 1118
Score = 611 bits (308), Expect = e-174
Identities = 318/323 (98%)
Strand = Plus / Minus
Query: 1 gaccaaaaacaaaaactcaagatacaaatacatatccaaagaatagcggttttcacaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 gaccaaaaacaaaaactcaagatacaaatacatatccaaagaatagcggttttcacaaga 1059
Query: 61 nctgagacaattttccaaagangagaacacaaaacanaacaattctatggcctaaaagat 120
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 1058 actgagacaattttccaaagaagagaacacaaaacaaaacaattctatggcctaaaagat 999
Query: 121 gttgttaactcattaacctcaacttctctgagnttgaagagagaaaagaagaagaagaaa 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 998 gttgttaactcattaacctcaacttctctgagattgaagagagaaaagaagaagaagaaa 939
Query: 181 gctcctatctatgctcgaacactactccacgaggttccagataatccccgaaactaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 gctcctatctatgctcgaacactactccacgaggttccagataatccccgaaactaatca 879
Query: 241 aagtgaccacttggcactttaaaacaccagccttttgatgangatgctcattctgtttcc 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 878 aagtgaccacttggcactttaaaacaccagccttttgatgaagatgctcattctgtttcc 819
Query: 301 aaactgtgattctgcagaggatt 323
|||||||||||||||||||||||
Sbjct: 818 aaactgtgattctgcagaggatt 796
>At5g40450.1 68418.m04905 expressed protein
Length = 8748
Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 154 ttgaagagagaaaagaagaagaaga 178
|||||| ||||||||||||||||||
Sbjct: 3596 ttgaagtgagaaaagaagaagaaga 3620
>At5g66440.1 68418.m08379 expressed protein
Length = 863
Score = 40.1 bits (20), Expect = 0.011
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 161 gagaaaagaagaagaagaaa 180
||||||||||||||||||||
Sbjct: 24 gagaaaagaagaagaagaaa 5
>At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family protein contains
Pfam profile: PF00514 armadillo/beta-catenin-like repeat
Length = 2363
Score = 40.1 bits (20), Expect = 0.011
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 160 agagaaaagaagaagaagaa 179
||||||||||||||||||||
Sbjct: 59 agagaaaagaagaagaagaa 40
>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) identical to
pseudo-response regulator 5 GI:10281006 from
[Arabidopsis thaliana]
Length = 2226
Score = 40.1 bits (20), Expect = 0.011
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 166 aagaagaagaagaaagctcc 185
||||||||||||||||||||
Sbjct: 280 aagaagaagaagaaagctcc 261
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,936
Number of Sequences: 29161
Number of extensions: 28936
Number of successful extensions: 7680
Number of sequences better than 10.0: 386
length of query: 323
length of database: 44,058,232
effective HSP length: 16
effective length of query: 307
effective length of database: 43,591,656
effective search space: 13382638392
effective search space used: 13382638392
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)