BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.029.Contig1
(614 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21045.1 68415.m02497 senescence-associated family prote... 1201 0.0
At2g38300.1 68415.m04705 myb family transcription factor 38 0.085
At4g24790.1 68417.m03550 expressed protein ; expression sup... 36 0.34
At1g68790.1 68414.m07863 expressed protein 36 0.34
At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomeras... 34 1.3
>At2g21045.1 68415.m02497 senescence-associated family protein contains
similarity to senescence-associated gene Ntdin from
GI:7594903 [Nicotiana tabacum]; contains C2-domain
profile. (PS50004;PF00168)
Length = 689
Score = 1201 bits (606), Expect = 0.0
Identities = 613/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Minus
Query: 1 gaataataccttgtgaaattaaatggccgaagtccatacataaacgcatatgatataact 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 689 gaataataccttgtgaaattaaatggccgaagtccatacataaacgcatatgatataa-t 631
Query: 61 gtttaggccgaagaaagcccaaaagtataaataattaacagcccatatagttaagacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gtttaggccgaagaaagcccaaaagtataaataattaacagcccatatagttaagacact 571
Query: 121 cgtcgagctcgtgtccttattattagaaaggaaacctctcacaacatcaatttcattgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cgtcgagctcgtgtccttattattagaaaggaaacctctcacaacatcaatttcattgca 511
Query: 181 acgtcacaacatcactttcaagtttcaagtgccgatttagttttcctttggcctgaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 acgtcacaacatcactttcaagtttcaagtgccgatttagttttcctttggcctgaactt 451
Query: 241 gcaagcaatcttgaggtcttccgggggtttgtccccggcgaatccagcgtcaacccaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcaagcaatcttgaggtcttccgggggtttgtccccggcgaatccagcgtcaacccaagc 391
Query: 301 cgagtagcctccccccatgttagccacatggtcgtacccctcgttaagaagatcaacgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cgagtagcctccccccatgttagccacatggtcgtacccctcgttaagaagatcaacgca 331
Query: 361 agcacgacttcctcttcctccagcgttacaagccacgatcaaatgttcatctttcttgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agcacgacttcctcttcctccagcgttacaagccacgatcaaatgttcatctttcttgca 271
Query: 421 aaccgatgccacttgagaaaggaaatcaggatttataaccctaccttcatctgttttgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaccgatgccacttgagaaaggaaatcaggatttataaccctaccttcatctgttttgaa 211
Query: 481 catataaggaatgttcaaagcctcctcaacatgactcttggcaaattcttcatttgtcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 catataaggaatgttcaaagcctcctcaacatgactcttggcaaattcttcatttgtcct 151
Query: 541 tacgtcgagatatcggtgaccagtactaagaaagcctttagctgtataaacatcaacggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tacgtcgagatatcggtgaccagtactaagaaagcctttagctgtataaacatcaacggt 91
Query: 601 ctcaacatcttcaa 614
||||||||||||||
Sbjct: 90 ctcaacatcttcaa 77
>At2g38300.1 68415.m04705 myb family transcription factor
Length = 1414
Score = 38.2 bits (19), Expect = 0.085
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 137 ttattattagaaaggaaac 155
|||||||||||||||||||
Sbjct: 1303 ttattattagaaaggaaac 1321
>At4g24790.1 68417.m03550 expressed protein ; expression supported by MPSS
Length = 2448
Score = 36.2 bits (18), Expect = 0.34
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 499 agcctcctcaacatgact 516
||||||||||||||||||
Sbjct: 420 agcctcctcaacatgact 403
>At1g68790.1 68414.m07863 expressed protein
Length = 3643
Score = 36.2 bits (18), Expect = 0.34
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 490 aatgttcaaagcctcctc 507
||||||||||||||||||
Sbjct: 2451 aatgttcaaagcctcctc 2434
>At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase / FK506-binding
protein (ROF1) identical to rotamase FKBP (ROF1)
GB:U49453 [Arabidopsis thaliana] (Mol. Gen. Genet. 252
(5), 510-517 (1996))
Length = 1974
Score = 34.2 bits (17), Expect = 1.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 465 cttcatctgttttgaac 481
|||||||||||||||||
Sbjct: 1026 cttcatctgttttgaac 1010
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,337
Number of Sequences: 29161
Number of extensions: 18337
Number of successful extensions: 1574
Number of sequences better than 10.0: 18
length of query: 614
length of database: 44,058,232
effective HSP length: 17
effective length of query: 597
effective length of database: 43,562,495
effective search space: 26006809515
effective search space used: 26006809515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)