BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.028.Contig1
(999 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19835.1 68414.m02487 expressed protein contains Pfam PF... 1978 0.0
At1g47900.1 68414.m05334 expressed protein 42 0.009
At4g36860.2 68417.m05227 LIM domain-containing protein low ... 40 0.035
At4g36860.1 68417.m05226 LIM domain-containing protein low ... 40 0.035
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finge... 38 0.14
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911: Plant protein
of unknown function (DUF869)
Length = 3444
Score = 1978 bits (998), Expect = 0.0
Identities = 998/998 (100%)
Strand = Plus / Plus
Query: 1 aaagaaaaagcagagagcaaccttgcaagctgtgaagcagatcttgaagcaactaagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2447 aaagaaaaagcagagagcaaccttgcaagctgtgaagcagatcttgaagcaactaagacc 2506
Query: 61 aaactacaagaaacagagaaacttcttgctgaagtcaaatcagacttggaatctgctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507 aaactacaagaaacagagaaacttcttgctgaagtcaaatcagacttggaatctgctcag 2566
Query: 121 aagtctaatggcatgggcgagactcaactcaaatgcatggtggaatcatatagatctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2567 aagtctaatggcatgggcgagactcaactcaaatgcatggtggaatcatatagatctctt 2626
Query: 181 gaaactagatcatcggagctggaaatcgagttgacttctcttaaaggcaagatcgaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2627 gaaactagatcatcggagctggaaatcgagttgacttctcttaaaggcaagatcgaaaac 2686
Query: 241 ttagaagatgagcttcacgacgagaaggaaaatcatcgagaagctttagccaaatgccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2687 ttagaagatgagcttcacgacgagaaggaaaatcatcgagaagctttagccaaatgccaa 2746
Query: 301 gaactcgaggagcaattacaaaggaacaaccaaaactgcccgaattgttcagtaatcgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2747 gaactcgaggagcaattacaaaggaacaaccaaaactgcccgaattgttcagtaatcgaa 2806
Query: 361 gatgatcctaaaagcaaacaggacaatgaactagcggctgctgcagagaagctagcagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2807 gatgatcctaaaagcaaacaggacaatgaactagcggctgctgcagagaagctagcagag 2866
Query: 421 tgtcaagagactatattacttctcgggaagcaactcaaatccatgtgtcctcaaacagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2867 tgtcaagagactatattacttctcgggaagcaactcaaatccatgtgtcctcaaacagaa 2926
Query: 481 caggttgcttcttctccaagccaagaacaacaagccctaaaccctgaagaagaggaatac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2927 caggttgcttcttctccaagccaagaacaacaagccctaaaccctgaagaagaggaatac 2986
Query: 541 gcaacttccacaaatcctcaagacagcaaattgagttcgccttcagacaaggatacacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2987 gcaacttccacaaatcctcaagacagcaaattgagttcgccttcagacaaggatacacca 3046
Query: 601 tcgatgaatacaatgaaatctccggtcgcgtcgaaacatagacacacgaagtcgaactcg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3047 tcgatgaatacaatgaaatctccggtcgcgtcgaaacatagacacacgaagtcgaactcg 3106
Query: 661 tcatcgtcctcatcaggacttactcctgagaaacactctagaggattcagcaggttcttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3107 tcatcgtcctcatcaggacttactcctgagaaacactctagaggattcagcaggttcttc 3166
Query: 721 tccactaaagcaaagtaaaaataaataaaaagaattaaaaaaagtataaatctaactatg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3167 tccactaaagcaaagtaaaaataaataaaaagaattaaaaaaagtataaatctaactatg 3226
Query: 781 ttgtatatcgtatctattgctactatattatatgggttttgtttttaattttttactatg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3227 ttgtatatcgtatctattgctactatattatatgggttttgtttttaattttttactatg 3286
Query: 841 tgggaatgttattttaacttaggttttttcttactttctttctttatttctgtactgaca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3287 tgggaatgttattttaacttaggttttttcttactttctttctttatttctgtactgaca 3346
Query: 901 acaatttggtgttgaattccgcggcgtgtaaatgtcaagctaccaaatctcgttttctca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3347 acaatttggtgttgaattccgcggcgtgtaaatgtcaagctaccaaatctcgttttctca 3406
Query: 961 ttggtgtgcgttattttttaatctaaggtttcttaaaa 998
||||||||||||||||||||||||||||||||||||||
Sbjct: 3407 ttggtgtgcgttattttttaatctaaggtttcttaaaa 3444
>At1g47900.1 68414.m05334 expressed protein
Length = 3361
Score = 42.1 bits (21), Expect = 0.009
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 373 agcaaacaggacaatgaactagcggctgctgcagagaagctagcagagtgtcaagagact 432
||||||||||| | || ||| |||| || ||||||||| |||| ||||||||||| ||
Sbjct: 2761 agcaaacaggagagagagctatcggcagcagcagagaagttagccgagtgtcaagaaacc 2820
Query: 433 atatt 437
|||||
Sbjct: 2821 atatt 2825
Score = 40.1 bits (20), Expect = 0.035
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 696 ctctagaggattcagcaggttcttctcc 723
|||||||||| | |||||||||||||||
Sbjct: 3120 ctctagaggaataagcaggttcttctcc 3147
>At4g36860.2 68417.m05227 LIM domain-containing protein low similarity to
LIM-domain protein [Branchiostoma floridae] GI:3360516,
DRAL/Slim3/FHL2 [Homo sapiens] GI:7209525; contains Pfam
profile PF00412: LIM domain
Length = 2057
Score = 40.1 bits (20), Expect = 0.035
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 62 aactacaagaaacagagaaacttcttgc 89
||||| |||||||||||||||| |||||
Sbjct: 586 aactagaagaaacagagaaactgcttgc 613
>At4g36860.1 68417.m05226 LIM domain-containing protein low similarity to
LIM-domain protein [Branchiostoma floridae] GI:3360516,
DRAL/Slim3/FHL2 [Homo sapiens] GI:7209525; contains Pfam
profile PF00412: LIM domain
Length = 2019
Score = 40.1 bits (20), Expect = 0.035
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 62 aactacaagaaacagagaaacttcttgc 89
||||| |||||||||||||||| |||||
Sbjct: 586 aactagaagaaacagagaaactgcttgc 613
>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam domains PF01535: PPR repeat and PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 3627
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 519 aaaccctgaagaagaggaa 537
|||||||||||||||||||
Sbjct: 1503 aaaccctgaagaagaggaa 1521
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,903
Number of Sequences: 29161
Number of extensions: 40903
Number of successful extensions: 1101
Number of sequences better than 10.0: 120
length of query: 999
length of database: 44,058,232
effective HSP length: 18
effective length of query: 981
effective length of database: 43,533,334
effective search space: 42706200654
effective search space used: 42706200654
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)