BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.026.Contig1
(495 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13270.1 68417.m02076 expressed protein 767 0.0
At4g13280.1 68417.m02077 terpene synthase/cyclase family pr... 82 5e-15
At4g09770.1 68417.m01605 meprin and TRAF homology domain-co... 56 3e-07
At3g01490.1 68416.m00073 protein kinase, putative similar t... 52 5e-06
At3g61120.1 68416.m06840 MADS-box protein (AGL13) 50 2e-05
>At4g13270.1 68417.m02076 expressed protein
Length = 912
Score = 767 bits (387), Expect = 0.0
Identities = 413/419 (98%), Gaps = 2/419 (0%)
Strand = Plus / Plus
Query: 4 taaaggtgttattccttttgatactattgctcaagttcaaggtgatcttg-tgttctctt 62
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 495 taaaggtgttattccttttgatactattgctcaagttcaaggtgatcttggtgttctctt 554
Query: 63 gttcaatatcccaattcagggtaaagtctcgtgtgaggtgtatgttaatcttaacaacca 122
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 555 gttcaatatcccaattcagggtaaagtgtcgtgtgaggtgtatgttaatgttaacaacca 614
Query: 123 caaaatttcacaccaagattgtcatcgtaagtgaagtgcaatcctgagctggatgagaga 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaaaatttcacaccaagattgtcatcgtaagtgaagtgcaatcctgagctggatgagaga 674
Query: 183 tgaagaaaccagataacatacgttgacatgttttgagttctggagaaatgatttgtgagt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tgaagaaaccagataacatacgttgacatgttttgagttctggagaaatgatttgtgagt 734
Query: 243 ttttgtatagataaaatactcttaatgttaaaactgaaagatagaatgagaaagatgaac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttttgtatagataaaatactcttaatgttaaaactgaaagatagaatgagaaagatgaac 794
Query: 303 cactactttctgtaattaaagttctttcttaattcctcagatgtgtacaagtgtttgctt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cactactttctgtaattaaagttctttcttaattcctcagatgtgtacaagtgtttgctt 854
Query: 363 ttatgttgtagacagtgaataaaccactcaataaaccatgtaattccaagtcttcaaag 421
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 855 ttatgttgtagaca-tgaataaaccactcaataaaccatgtaattcgaagtcttcaaag 912
>At4g13280.1 68417.m02077 terpene synthase/cyclase family protein predicted
protein, Arabidopsis thaliana
Length = 1608
Score = 81.8 bits (41), Expect = 5e-15
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 416 tcaaagacgtatgggatctatgagcagagttactatatact 456
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1608 tcaaagacgtatgggatctatgagcagagttactatatact 1568
>At4g09770.1 68417.m01605 meprin and TRAF homology domain-containing protein /
MATH domain-containing protein low similarity to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1098
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 454 actaaaaaaaaaaaaaaaaaaaaaaaaa 481
||||||||||||||||||||||||||||
Sbjct: 1047 actaaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 471 aaaaaaaaaaaaaaaaaaaaaaaaa 495
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 463 aaaaaaaaaaaaaaaaaaaaaaaaa 487
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 467 aaaaaaaaaaaaaaaaaaaaaaaaa 491
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 466 aaaaaaaaaaaaaaaaaaaaaaaaa 490
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 462 aaaaaaaaaaaaaaaaaaaaaaaaa 486
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 464 aaaaaaaaaaaaaaaaaaaaaaaaa 488
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 469 aaaaaaaaaaaaaaaaaaaaaaaaa 493
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 470 aaaaaaaaaaaaaaaaaaaaaaaaa 494
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 465 aaaaaaaaaaaaaaaaaaaaaaaaa 489
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 459 aaaaaaaaaaaaaaaaaaaaaaaaa 483
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 458 aaaaaaaaaaaaaaaaaaaaaaaaa 482
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 461 aaaaaaaaaaaaaaaaaaaaaaaaa 485
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 468 aaaaaaaaaaaaaaaaaaaaaaaaa 492
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 460 aaaaaaaaaaaaaaaaaaaaaaaaa 484
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
>At3g01490.1 68416.m00073 protein kinase, putative similar to ATMRK1
[Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 1738
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 460 aaaaaaaaaaaaaaaaaaaaaaaaaa 485
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 463 aaaaaaaaaaaaaaaaaaaaaaaaaa 488
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 467 aaaaaaaaaaaaaaaaaaaaaaaaaa 492
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 469 aaaaaaaaaaaaaaaaaaaaaaaaaa 494
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 470 aaaaaaaaaaaaaaaaaaaaaaaaaa 495
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 457 aaaaaaaaaaaaaaaaaaaaaaaaaa 482
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 459 aaaaaaaaaaaaaaaaaaaaaaaaaa 484
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 458 aaaaaaaaaaaaaaaaaaaaaaaaaa 483
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 465 aaaaaaaaaaaaaaaaaaaaaaaaaa 490
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 462 aaaaaaaaaaaaaaaaaaaaaaaaaa 487
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 461 aaaaaaaaaaaaaaaaaaaaaaaaaa 486
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 464 aaaaaaaaaaaaaaaaaaaaaaaaaa 489
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 466 aaaaaaaaaaaaaaaaaaaaaaaaaa 491
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
Score = 52.0 bits (26), Expect = 5e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 468 aaaaaaaaaaaaaaaaaaaaaaaaaa 493
||||||||||||||||||||||||||
Sbjct: 177 aaaaaaaaaaaaaaaaaaaaaaaaaa 202
>At3g61120.1 68416.m06840 MADS-box protein (AGL13)
Length = 915
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 461 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 489
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 464 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 492
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 458 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 486
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 466 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 494
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 463 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 491
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 457 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 485
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 467 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 495
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 460 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 488
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 459 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 487
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 462 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 490
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 465 aaaaaaaaaaaaaaaaaaaaaaaaaaaaa 493
||||||||||| |||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,180
Number of Sequences: 29161
Number of extensions: 68180
Number of successful extensions: 23279
Number of sequences better than 10.0: 352
length of query: 495
length of database: 44,058,232
effective HSP length: 17
effective length of query: 478
effective length of database: 43,562,495
effective search space: 20822872610
effective search space used: 20822872610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)