BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.024.Contig1
(1067 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10915.1 68416.m01314 reticulon family protein low simil... 2078 0.0
At3g10915.2 68416.m01315 reticulon family protein low simil... 2014 0.0
At3g10915.3 68416.m01316 reticulon family protein low simil... 1257 0.0
At4g00950.1 68417.m00128 expressed protein 40 0.038
At2g04070.1 68415.m00390 MATE efflux family protein similar... 38 0.15
>At3g10915.1 68416.m01314 reticulon family protein low similarity to rS-Rex-s
[Rattus norvegicus] GI:1143717, neuroendocrine-specific
protein C [Homo sapiens] GI:307311; contains Pfam profile
PF02453: Reticulon
Length = 1070
Score = 2078 bits (1048), Expect = 0.0
Identities = 1061/1065 (99%), Gaps = 4/1065 (0%)
Strand = Plus / Plus
Query: 4 gaagaaagttgactagaaacggagaatttccaaatgttgaatttgttggatgcatgtgaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gaagaaagttgactagaaacggagaatttccaaatgttgaatttgttggatgcatgtgaa 63
Query: 64 agccaattctatttggttcctccttgataatccacccaatcgctgtcattctcccatcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 agccaattctatttggttcctccttgataatccacccaatcgctgtcattctcccatcaa 123
Query: 124 tctagctgctttcacaaaccattgtactgagatcgtatctttaaggtaaatttcaaatcg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tctagctgctttcacaaaccattgtactgagatcgtatctttaaggtaaatttcaaatcg 183
Query: 184 gagtcggcgagatcgaaataggaacctggaagtcggagaatttgtgtaaattcggttttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gagtcggcgagatcgaaataggaacctggaagtcggagaatttgtgtaaattcggttttt 243
Query: 244 tttttttaattctccgatggatagtttaagtgatatcgatggtgatttcgatggaagaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttttttaattctccgatggatagtttaagtgatatcgatggtgatttcgatggaagaaa 303
Query: 304 tgaaggaggatcgtcatcggattatcgattgttgggtcggcagattacggttcatcagtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgaaggaggatcgtcatcggattatcgattgttgggtcggcagattacggttcatcagtt 363
Query: 364 catgggtggtggcaaag----ctgctgacttgctcttatggaggaggcgacatctttctt 419
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catgggtggtggcaaaggcgactgctgacttgctcttatggaggaggcgacatctttctt 423
Query: 420 tgggggttatcattatatcaactgtagcctggcttatattcgagttttccgggttgcctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgggggttatcattatatcaactgtagcctggcttatattcgagttttccgggttgcctt 483
Query: 480 tcttatctgtttcttcggatgtcttactcatcgtgatcatgatatcattcgttcatgccc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcttatctgtttcttcggatgtcttactcatcgtgatcatgatatcattcgttcatgccc 543
Query: 540 gggtttctgcttttaggaatagacagttgcattcgttgccagagcttgttctatcagagg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gggtttctgcttttaggaatagacagttgcattcgttgccagagcttgttctatcagagg 603
Query: 600 aaatggtgaatagtgctgcagcttctttccgtataaaactcaatcacttgcttgtaatgg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaatggtgaatagtgctgcagcttctttccgtataaaactcaatcacttgcttgtaatgg 663
Query: 660 ctcatgatgtcacagttggcaacgattttcgactcttcttcaaggtggtgatttgtctgt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctcatgatgtcacagttggcaacgattttcgactcttcttcaaggtggtgatttgtctgt 723
Query: 720 ggcttctctctgccattggtagctatatatctctctgcactcttctttacatcgggacca 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggcttctctctgccattggtagctatatatctctctgcactcttctttacatcgggacca 783
Query: 780 tcctatctgtaacaataccggctttgtacagtaaatatcaaagcaaagtagacaagtgtt 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tcctatctgtaacaataccggctttgtacagtaaatatcaaagcaaagtagacaagtgtt 843
Query: 840 gcgggacgattcacaggcggttgtctcaccactacaaaatagtagacgaaaatgttataa 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gcgggacgattcacaggcggttgtctcaccactacaaaatagtagacgaaaatgttataa 903
Query: 900 gcagactctcatggagcttatccaaggataaagattcatgagcttaactttggtgattct 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gcagactctcatggagcttatccaaggataaagattcatgagcttaactttggtgattct 963
Query: 960 gagaatgcttttacttgtttttgtttagcttttcttgttattcaccatttgtagtataac 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gagaatgcttttacttgtttttgtttagcttttcttgttattcaccatttgtagtataac 1023
Query: 1020 taaacgccatatccagaatgaatataagatggtttctttgttcaa 1064
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 taaacgccatatccagaatgaatataagatggtttctttgttcaa 1068
>At3g10915.2 68416.m01315 reticulon family protein low similarity to rS-Rex-s
[Rattus norvegicus] GI:1143717, neuroendocrine-specific
protein C [Homo sapiens] GI:307311; contains Pfam profile
PF02453: Reticulon
Length = 1016
Score = 2014 bits (1016), Expect = 0.0
Identities = 1016/1016 (100%)
Strand = Plus / Plus
Query: 4 gaagaaagttgactagaaacggagaatttccaaatgttgaatttgttggatgcatgtgaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaaagttgactagaaacggagaatttccaaatgttgaatttgttggatgcatgtgaa 60
Query: 64 agccaattctatttggttcctccttgataatccacccaatcgctgtcattctcccatcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agccaattctatttggttcctccttgataatccacccaatcgctgtcattctcccatcaa 120
Query: 124 tctagctgctttcacaaaccattgtactgagatcgtatctttaaggtaaatttcaaatcg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctagctgctttcacaaaccattgtactgagatcgtatctttaaggtaaatttcaaatcg 180
Query: 184 gagtcggcgagatcgaaataggaacctggaagtcggagaatttgtgtaaattcggttttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagtcggcgagatcgaaataggaacctggaagtcggagaatttgtgtaaattcggttttt 240
Query: 244 tttttttaattctccgatggatagtttaagtgatatcgatggtgatttcgatggaagaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttttttaattctccgatggatagtttaagtgatatcgatggtgatttcgatggaagaaa 300
Query: 304 tgaaggaggatcgtcatcggattatcgattgttgggtcggcagattacggttcatcagtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgaaggaggatcgtcatcggattatcgattgttgggtcggcagattacggttcatcagtt 360
Query: 364 catgggtggtggcaaagctgctgacttgctcttatggaggaggcgacatctttctttggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catgggtggtggcaaagctgctgacttgctcttatggaggaggcgacatctttctttggg 420
Query: 424 ggttatcattatatcaactgtagcctggcttatattcgagttttccgggttgcctttctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggttatcattatatcaactgtagcctggcttatattcgagttttccgggttgcctttctt 480
Query: 484 atctgtttcttcggatgtcttactcatcgtgatcatgatatcattcgttcatgcccgggt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atctgtttcttcggatgtcttactcatcgtgatcatgatatcattcgttcatgcccgggt 540
Query: 544 ttctgcttttaggaatagacagttgcattcgttgccagagcttgttctatcagaggaaat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttctgcttttaggaatagacagttgcattcgttgccagagcttgttctatcagaggaaat 600
Query: 604 ggtgaatagtgctgcagcttctttccgtataaaactcaatcacttgcttgtaatggctca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggtgaatagtgctgcagcttctttccgtataaaactcaatcacttgcttgtaatggctca 660
Query: 664 tgatgtcacagttggcaacgattttcgactcttcttcaaggtggtgatttgtctgtggct 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgatgtcacagttggcaacgattttcgactcttcttcaaggtggtgatttgtctgtggct 720
Query: 724 tctctctgccattggtagctatatatctctctgcactcttctttacatcgggaccatcct 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tctctctgccattggtagctatatatctctctgcactcttctttacatcgggaccatcct 780
Query: 784 atctgtaacaataccggctttgtacagtaaatatcaaagcaaagtagacaagtgttgcgg 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atctgtaacaataccggctttgtacagtaaatatcaaagcaaagtagacaagtgttgcgg 840
Query: 844 gacgattcacaggcggttgtctcaccactacaaaatagtagacgaaaatgttataagcag 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gacgattcacaggcggttgtctcaccactacaaaatagtagacgaaaatgttataagcag 900
Query: 904 actctcatggagcttatccaaggataaagattcatgagcttaactttggtgattctgaga 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 actctcatggagcttatccaaggataaagattcatgagcttaactttggtgattctgaga 960
Query: 964 atgcttttacttgtttttgtttagcttttcttgttattcaccatttgtagtataac 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 atgcttttacttgtttttgtttagcttttcttgttattcaccatttgtagtataac 1016
>At3g10915.3 68416.m01316 reticulon family protein low similarity to rS-Rex-s
[Rattus norvegicus] GI:1143717, neuroendocrine-specific
protein C [Homo sapiens] GI:307311; contains Pfam
profile PF02453: Reticulon
Length = 1053
Score = 1257 bits (634), Expect = 0.0
Identities = 647/651 (99%), Gaps = 4/651 (0%)
Strand = Plus / Plus
Query: 59 gtgaaagccaattctatttggttcctccttgataatccacccaatcgctgtcattctccc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaaagccaattctatttggttcctccttgataatccacccaatcgctgtcattctccc 60
Query: 119 atcaatctagctgctttcacaaaccattgtactgagatcgtatctttaaggtaaatttca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaatctagctgctttcacaaaccattgtactgagatcgtatctttaaggtaaatttca 120
Query: 179 aatcggagtcggcgagatcgaaataggaacctggaagtcggagaatttgtgtaaattcgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatcggagtcggcgagatcgaaataggaacctggaagtcggagaatttgtgtaaattcgg 180
Query: 239 ttttttttttttaattctccgatggatagtttaagtgatatcgatggtgatttcgatgga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttttttttttaattctccgatggatagtttaagtgatatcgatggtgatttcgatgga 240
Query: 299 agaaatgaaggaggatcgtcatcggattatcgattgttgggtcggcagattacggttcat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaaatgaaggaggatcgtcatcggattatcgattgttgggtcggcagattacggttcat 300
Query: 359 cagttcatgggtggtggcaaag----ctgctgacttgctcttatggaggaggcgacatct 414
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 301 cagttcatgggtggtggcaaaggcgactgctgacttgctcttatggaggaggcgacatct 360
Query: 415 ttctttgggggttatcattatatcaactgtagcctggcttatattcgagttttccgggtt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttctttgggggttatcattatatcaactgtagcctggcttatattcgagttttccgggtt 420
Query: 475 gcctttcttatctgtttcttcggatgtcttactcatcgtgatcatgatatcattcgttca 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcctttcttatctgtttcttcggatgtcttactcatcgtgatcatgatatcattcgttca 480
Query: 535 tgcccgggtttctgcttttaggaatagacagttgcattcgttgccagagcttgttctatc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgcccgggtttctgcttttaggaatagacagttgcattcgttgccagagcttgttctatc 540
Query: 595 agaggaaatggtgaatagtgctgcagcttctttccgtataaaactcaatcacttgcttgt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaggaaatggtgaatagtgctgcagcttctttccgtataaaactcaatcacttgcttgt 600
Query: 655 aatggctcatgatgtcacagttggcaacgattttcgactcttcttcaaggt 705
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aatggctcatgatgtcacagttggcaacgattttcgactcttcttcaaggt 651
Score = 601 bits (303), Expect = e-171
Identities = 303/303 (100%)
Strand = Plus / Plus
Query: 702 aggtggtgatttgtctgtggcttctctctgccattggtagctatatatctctctgcactc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aggtggtgatttgtctgtggcttctctctgccattggtagctatatatctctctgcactc 810
Query: 762 ttctttacatcgggaccatcctatctgtaacaataccggctttgtacagtaaatatcaaa 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ttctttacatcgggaccatcctatctgtaacaataccggctttgtacagtaaatatcaaa 870
Query: 822 gcaaagtagacaagtgttgcgggacgattcacaggcggttgtctcaccactacaaaatag 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gcaaagtagacaagtgttgcgggacgattcacaggcggttgtctcaccactacaaaatag 930
Query: 882 tagacgaaaatgttataagcagactctcatggagcttatccaaggataaagattcatgag 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 tagacgaaaatgttataagcagactctcatggagcttatccaaggataaagattcatgag 990
Query: 942 cttaactttggtgattctgagaatgcttttacttgtttttgtttagcttttcttgttatt 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 cttaactttggtgattctgagaatgcttttacttgtttttgtttagcttttcttgttatt 1050
Query: 1002 cac 1004
|||
Sbjct: 1051 cac 1053
>At4g00950.1 68417.m00128 expressed protein
Length = 1242
Score = 40.1 bits (20), Expect = 0.038
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 272 agtgatatcgatggtgattt 291
||||||||||||||||||||
Sbjct: 485 agtgatatcgatggtgattt 504
>At2g04070.1 68415.m00390 MATE efflux family protein similar to ripening regulated
protein DDTFR18 [Lycopersicon esculentum] GI:12231296;
contains Pfam profile PF01554: Uncharacterized membrane
protein family
Length = 1431
Score = 38.2 bits (19), Expect = 0.15
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 239 ttttttttttttaattctc 257
|||||||||||||||||||
Sbjct: 1405 ttttttttttttaattctc 1423
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,803
Number of Sequences: 29161
Number of extensions: 41803
Number of successful extensions: 982
Number of sequences better than 10.0: 115
length of query: 1067
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1049
effective length of database: 43,533,334
effective search space: 45666467366
effective search space used: 45666467366
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)