BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.022.Contig1
(592 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37195.1 68415.m04563 expressed protein 1120 0.0
At4g30720.1 68417.m04354 expressed protein hypothetical pro... 36 0.32
At3g02260.1 68416.m00207 auxin transport protein (BIG) near... 36 0.32
At1g16950.1 68414.m02057 expressed protein 36 0.32
At5g03490.1 68418.m00305 UDP-glucoronosyl/UDP-glucosyl tran... 34 1.3
>At2g37195.1 68415.m04563 expressed protein
Length = 591
Score = 1120 bits (565), Expect = 0.0
Identities = 589/593 (99%), Gaps = 3/593 (0%)
Strand = Plus / Plus
Query: 1 agtctaatcagaggaggaagaatggcgggaggatctgagaggaagacgatacntggtggg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 agtctaatcagaggaggaagaatggcgggaggatctgagaggaagacgatac-tggtggg 59
Query: 61 tttggttctagctcttgttcttggtatcggtgtttacttaaggctttggactatcgatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tttggttctagctcttgttcttggtatcggtgtttacttaaggctttggactatcgatta 119
Query: 121 tactctatcttccgatgacacagagcgcttaaggagacagtttgatttggcaaatagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tactctatcttccgatgacacagagcgcttaaggagacagtttgatttggcaaatagaga 179
Query: 181 ggcaatggatgaatctgcagattggcggagaatgtttgataaggaagctgacaaagcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 180 ggcaatggatgaatctgcagattggcggagaatgtttgataaggaagctgagaaagcttc 239
Query: 241 taaatgtaacacagaactttcactgatcaaagagtcatctgggaatggaaacacctttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 taaatgtaacacagaactttcactgatcaaagagtcatctgggaatggaaacacctttac 299
Query: 301 ctccaatcaaaagctagagtcattaaaaaaggaaaatgcggcattgctcattcaaataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctccaatcaaaagctagagtcattaaaaaaggaaaatgcggcattgctcattcaaataga 359
Query: 361 gacattaaaacaagagcttgaagcttcacggttaaaggtgccactcacggcaggcacccc 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 360 gacattaaaacaagagcttgaagcttcacggttaaa-gtgccactcacggcaggcacccc 418
Query: 421 gttagaatactgttcttgatatgttgacatgttgtcagttatagatttagtcctccgctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gttagaatactgttcttgatatgttgacatgttgtcagttatagatttagtcctccgctg 478
Query: 481 gtaagaaatcccggaatgtcatatacatcatataggctctttcatggaaattaacttttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtaagaaatcccggaatgtcatatacatcatataggctctttcatggaaattaacttttt 538
Query: 541 aacagcaccaaccacagagtcttgta-tttttttgaattcagttctcaggccc 592
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 539 aacagcaccaaccacagagtcttgtattttttttgaattcagttctcaggccc 591
>At4g30720.1 68417.m04354 expressed protein hypothetical protein - Synechocystis
sp. (strain PCC 6803),PIR2:S76076
Length = 2609
Score = 36.2 bits (18), Expect = 0.32
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 288 gaaacacctttacctcca 305
||||||||||||||||||
Sbjct: 1852 gaaacacctttacctcca 1869
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly identical to
auxin transport protein; BIG [Arabidopsis thaliana]
GI:21779966; contains Pfam profiles PF02207: Putative
zinc finger in N-recognin, PF00569: Zinc finger ZZ type
Length = 15465
Score = 36.2 bits (18), Expect = 0.32
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 368 aaacaagagcttgaagct 385
||||||||||||||||||
Sbjct: 250 aaacaagagcttgaagct 233
>At1g16950.1 68414.m02057 expressed protein
Length = 551
Score = 36.2 bits (18), Expect = 0.32
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 439 atatgttgacatgttgtc 456
||||||||||||||||||
Sbjct: 390 atatgttgacatgttgtc 407
>At5g03490.1 68418.m00305 UDP-glucoronosyl/UDP-glucosyl transferase family
protein contains Pfam profile: PF00201 UDP-glucoronosyl
and UDP-glucosyl transferase
Length = 1588
Score = 34.2 bits (17), Expect = 1.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 279 ctgggaatggaaacacc 295
|||||||||||||||||
Sbjct: 169 ctgggaatggaaacacc 153
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,950
Number of Sequences: 29161
Number of extensions: 19950
Number of successful extensions: 1672
Number of sequences better than 10.0: 35
length of query: 592
length of database: 44,058,232
effective HSP length: 17
effective length of query: 575
effective length of database: 43,562,495
effective search space: 25048434625
effective search space used: 25048434625
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)