BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.021.Contig2
(819 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56610.1 68414.m06511 syntaxin-related family protein si... 779 0.0
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arab... 50 3e-05
At4g31020.1 68417.m04405 expressed protein 40 0.029
At1g69790.1 68414.m08030 protein kinase, putative similar t... 38 0.11
At3g52620.1 68416.m05797 hypothetical protein phosphate act... 36 0.45
>At1g56610.1 68414.m06511 syntaxin-related family protein similar to proteins
At3g54160, At1g47920 (syntaxin SYP81), At5g41830,
At3g44180, At3g58890, At1g48390, At3g59270 [Arabidopsis
thaliana]; contains a novel domain similar to F-box that
is shared among other proteins in Arabidopsis
Length = 2420
Score = 779 bits (393), Expect = 0.0
Identities = 407/409 (99%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 399 catttaattgtttttgtagctctctctgtctctgtcttttcttgatgagaccaccggacc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 catttaattgtttttgtagctctctctgtctctgtcttttcttgatgagaccaccggacc 2361
Query: 459 agacaccctgctgttaatacatttacctggaagagagtggaatcggaatcatagaatcgc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 agacaccctgctgttaatacatttacctggaagagagtggaatcggaatcatagaatcgc 2301
Query: 519 ttcagttctcaacgccttgagttactactcttcttgctcataaatcagaagggtttcaat 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 ttcagttctcaacgccttgagttactactcttcttgctcataaatcagaagggtttcaat 2241
Query: 579 gtacaanggtcgattgatggtttgctcgctccacaaactcagaagcctctattgatgaaa 638
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 gtacaa-ggtcgattgatg-tttgctcgctccacaaactcagaagcctctattgatgaaa 2183
Query: 639 ttgcagacgattttggaagactcaaatgatgatgattggtggtgaggctacctcgctagt 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2182 ttgcagacgattttggaagactcaaatgatgatgattggtggtgaggctacctcgctagt 2123
Query: 699 gtatcaattgttttctcaaaagctttaaaacgttgaaaataagcataattccacaggttt 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2122 gtatcaattgttttctcaaaagctttaaaacgttgaaaataagcataattccacaggttt 2063
Query: 759 atatttgtatttgcacttctctgagaatagtggaggtttcagttgttaa 807
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 atatttgtatttgcacttctctgagaatagtggaggtttcagttgttaa 2014
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis thaliana,
EMBL:AC007020
Length = 2464
Score = 50.1 bits (25), Expect = 3e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 485 ctggaagagagtggaatcggaatcatagaatcgcttcagtt 525
|||||||||||||||| | ||||| |||||| |||||||||
Sbjct: 1794 ctggaagagagtggaacctgaatcttagaattgcttcagtt 1834
Score = 38.2 bits (19), Expect = 0.11
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 441 tgatgagaccaccggaccagaca 463
|||||||||||| ||||||||||
Sbjct: 1708 tgatgagaccactggaccagaca 1730
Score = 34.2 bits (17), Expect = 1.8
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 152 atcgtctggggaatcagcagctcct 176
|||| ||| ||||||||||||||||
Sbjct: 361 atcgcctgcggaatcagcagctcct 385
>At4g31020.1 68417.m04405 expressed protein
Length = 1557
Score = 40.1 bits (20), Expect = 0.029
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 418 ctctctctgtctctgtcttt 437
||||||||||||||||||||
Sbjct: 21 ctctctctgtctctgtcttt 2
>At1g69790.1 68414.m08030 protein kinase, putative similar to protein kinase
APK1A [Arabidopsis thaliana] SWISS-PROT:Q06548
Length = 1408
Score = 38.2 bits (19), Expect = 0.11
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 559 taaatcagaagggtttcaa 577
|||||||||||||||||||
Sbjct: 451 taaatcagaagggtttcaa 469
>At3g52620.1 68416.m05797 hypothetical protein phosphate actyltransferase,
Staphylococcus aureus, EMBL:SAU271496
Length = 264
Score = 36.2 bits (18), Expect = 0.45
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 171 gctcctgcgacggccaca 188
||||||||||||||||||
Sbjct: 224 gctcctgcgacggccaca 207
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,820
Number of Sequences: 29161
Number of extensions: 38820
Number of successful extensions: 1153
Number of sequences better than 10.0: 85
length of query: 819
length of database: 44,058,232
effective HSP length: 17
effective length of query: 802
effective length of database: 43,562,495
effective search space: 34937120990
effective search space used: 34937120990
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)