BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.021.Contig1
(1247 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56610.1 68414.m06511 syntaxin-related family protein si... 1049 0.0
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arab... 50 5e-05
At4g31020.1 68417.m04405 expressed protein 40 0.044
At1g69790.1 68414.m08030 protein kinase, putative similar t... 38 0.17
At5g56520.1 68418.m07054 expressed protein 36 0.69
>At1g56610.1 68414.m06511 syntaxin-related family protein similar to proteins
At3g54160, At1g47920 (syntaxin SYP81), At5g41830,
At3g44180, At3g58890, At1g48390, At3g59270 [Arabidopsis
thaliana]; contains a novel domain similar to F-box that
is shared among other proteins in Arabidopsis
Length = 2420
Score = 1049 bits (529), Expect = 0.0
Identities = 529/529 (100%)
Strand = Plus / Minus
Query: 719 catttaattgtttttgtagctctctctgtctctgtcttttcttgatgagaccaccggacc 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 catttaattgtttttgtagctctctctgtctctgtcttttcttgatgagaccaccggacc 2361
Query: 779 agacaccctgctgttaatacatttacctggaagagagtggaatcggaatcatagaatcgc 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 agacaccctgctgttaatacatttacctggaagagagtggaatcggaatcatagaatcgc 2301
Query: 839 ttcagttctcaacgccttgagttactactcttcttgctcataaatcagaagggtttcaat 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 ttcagttctcaacgccttgagttactactcttcttgctcataaatcagaagggtttcaat 2241
Query: 899 gtacaaggtcgattgatgtttgctcgctccacaaactcagaagcctctattgatgaaatt 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 gtacaaggtcgattgatgtttgctcgctccacaaactcagaagcctctattgatgaaatt 2181
Query: 959 gcagacgattttggaagactcaaatgatgatgattggtggtgaggctacctcgctagtgt 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 gcagacgattttggaagactcaaatgatgatgattggtggtgaggctacctcgctagtgt 2121
Query: 1019 atcaattgttttctcaaaagctttaaaacgttgaaaataagcataattccacaggtttat 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 atcaattgttttctcaaaagctttaaaacgttgaaaataagcataattccacaggtttat 2061
Query: 1079 atttgtatttgcacttctctgagaatagtggaggtttcagttgttaatgagtgtatttgc 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 atttgtatttgcacttctctgagaatagtggaggtttcagttgttaatgagtgtatttgc 2001
Query: 1139 tgcctttaatcacaagttttttcttaacttttctaagtaagcattcacagagtttgtaat 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 tgcctttaatcacaagttttttcttaacttttctaagtaagcattcacagagtttgtaat 1941
Query: 1199 atatctctttaattacattaccttaagaacaagatgcattttcagagcc 1247
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 atatctctttaattacattaccttaagaacaagatgcattttcagagcc 1892
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis thaliana,
EMBL:AC007020
Length = 2464
Score = 50.1 bits (25), Expect = 5e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 805 ctggaagagagtggaatcggaatcatagaatcgcttcagtt 845
|||||||||||||||| | ||||| |||||| |||||||||
Sbjct: 1794 ctggaagagagtggaacctgaatcttagaattgcttcagtt 1834
Score = 38.2 bits (19), Expect = 0.17
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 761 tgatgagaccaccggaccagaca 783
|||||||||||| ||||||||||
Sbjct: 1708 tgatgagaccactggaccagaca 1730
Score = 34.2 bits (17), Expect = 2.7
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 155 atcgtctggggaatcagcagctcct 179
|||| ||| ||||||||||||||||
Sbjct: 361 atcgcctgcggaatcagcagctcct 385
>At4g31020.1 68417.m04405 expressed protein
Length = 1557
Score = 40.1 bits (20), Expect = 0.044
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 738 ctctctctgtctctgtcttt 757
||||||||||||||||||||
Sbjct: 21 ctctctctgtctctgtcttt 2
>At1g69790.1 68414.m08030 protein kinase, putative similar to protein kinase
APK1A [Arabidopsis thaliana] SWISS-PROT:Q06548
Length = 1408
Score = 38.2 bits (19), Expect = 0.17
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 879 taaatcagaagggtttcaa 897
|||||||||||||||||||
Sbjct: 451 taaatcagaagggtttcaa 469
>At5g56520.1 68418.m07054 expressed protein
Length = 745
Score = 36.2 bits (18), Expect = 0.69
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 357 gttttgattttgggttta 374
||||||||||||||||||
Sbjct: 435 gttttgattttgggttta 452
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,623
Number of Sequences: 29161
Number of extensions: 42623
Number of successful extensions: 1051
Number of sequences better than 10.0: 29
length of query: 1247
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1229
effective length of database: 43,533,334
effective search space: 53502467486
effective search space used: 53502467486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)