BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.020.Contig1
(454 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16385.1 68415.m01875 expressed protein Requires functio... 892 0.0
At4g34600.1 68417.m04915 expressed protein 48 6e-05
At5g50120.1 68418.m06207 transducin family protein / WD-40 ... 38 0.062
At5g67580.2 68418.m08522 myb family transcription factor co... 36 0.25
At5g67580.1 68418.m08521 myb family transcription factor co... 36 0.25
>At2g16385.1 68415.m01875 expressed protein Requires functional assignment.
Length = 528
Score = 892 bits (450), Expect = 0.0
Identities = 453/454 (99%)
Strand = Plus / Plus
Query: 1 ttaagttatgggtatgtcaccattaacggtgaagaaacttggtttcatcttcatgattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ttaagttatgggtatgtcaccattaacggtgaagaaacttggtttcatcttcatgattgt 129
Query: 61 ttcagcttctgctctttctgtctcctttgcagcccgaccatcgatttttgttcataaaaa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 130 ttcagcttctgctctttctgtctcctttgcaggccgaccatcgatttttgttcataaaaa 189
Query: 121 aataaatcttcgcgaagagatggtggaaagaagcatgcatgagcatgagaggcttctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aataaatcttcgcgaagagatggtggaaagaagcatgcatgagcatgagaggcttctaag 249
Query: 181 aatgaacacaaaggattatgggaacaacagtccgtcacctagacttgagagacctccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aatgaacacaaaggattatgggaacaacagtccgtcacctagacttgagagacctccttt 309
Query: 241 caagcttatacccaattgatgacattagaattggttctaatccatccttaaataatatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caagcttatacccaattgatgacattagaattggttctaatccatccttaaataatatat 369
Query: 301 acatatataggtagaattagtttcagtgactatatagttccatcgaaatttggagatgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acatatataggtagaattagtttcagtgactatatagttccatcgaaatttggagatgta 429
Query: 361 atataaataaaggtaagaagctagcttgagctatgctatactcttatatttggtgtgctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atataaataaaggtaagaagctagcttgagctatgctatactcttatatttggtgtgctg 489
Query: 421 catagattttggcattttgccatacatccatggc 454
||||||||||||||||||||||||||||||||||
Sbjct: 490 catagattttggcattttgccatacatccatggc 523
>At4g34600.1 68417.m04915 expressed protein
Length = 535
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 229 gagacctcctttcaagcttatacccaattgat 260
||||||||||||||||||||| ||||| ||||
Sbjct: 277 gagacctcctttcaagcttattcccaactgat 308
Score = 42.1 bits (21), Expect = 0.004
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 146 gaaagaagcatgcatgagcatgagaggcttctaagaatgaa 186
|||||||| || |||||||||||||| |||| ||||||||
Sbjct: 194 gaaagaagaatacatgagcatgagagaattctgagaatgaa 234
Score = 36.2 bits (18), Expect = 0.25
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 28 ggtgaagaaacttggtttcatc 49
|||||||||||| |||||||||
Sbjct: 73 ggtgaagaaactaggtttcatc 94
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat family
protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 1260
Score = 38.2 bits (19), Expect = 0.062
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 349 tttggagatgtaatataaa 367
|||||||||||||||||||
Sbjct: 39 tttggagatgtaatataaa 21
>At5g67580.2 68418.m08522 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1720
Score = 36.2 bits (18), Expect = 0.25
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 65 gcttctgctctttctgtctcctttgc 90
|||||||||||||||| ||| |||||
Sbjct: 933 gcttctgctctttctgcctcttttgc 908
>At5g67580.1 68418.m08521 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1799
Score = 36.2 bits (18), Expect = 0.25
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 65 gcttctgctctttctgtctcctttgc 90
|||||||||||||||| ||| |||||
Sbjct: 1012 gcttctgctctttctgcctcttttgc 987
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,756
Number of Sequences: 29161
Number of extensions: 15756
Number of successful extensions: 1294
Number of sequences better than 10.0: 42
length of query: 454
length of database: 44,058,232
effective HSP length: 17
effective length of query: 437
effective length of database: 43,562,495
effective search space: 19036810315
effective search space used: 19036810315
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)