BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.002.Contig1
(613 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_797416.1| cell division protein MukB [Vibrio parahae... 39 0.073
ref|NP_935091.1| cell division protein MukB [Vibrio vulnifi... 36 0.62
ref|NP_761003.1| Cell division protein MukB [Vibrio vulnifi... 36 0.62
ref|NP_178403.1| Toll-Interleukin-Resistance (TIR) domain-c... 35 0.80
ref|NP_178429.1| Toll-Interleukin-Resistance (TIR) domain-c... 35 1.4
ref|NP_175170.1| Toll-Interleukin-Resistance (TIR) domain-c... 35 1.4
>ref|NP_797416.1| cell division protein MukB [Vibrio parahaemolyticus RIMD
2210633]|gi|41017335|sp|Q87QW2|MUKB_VIBPA Chromosome
partition protein mukB (Structural maintenance of
chromosome related protein)|gi|28806024|dbj|BAC59300.1|
cell division protein MukB [Vibrio parahaemolyticus]
Length = 1487
Score = 38.9 bits (89), Expect = 0.073
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 79 AEEGTEQNPTRRKERSHSRSFIKKNRAS-YERSL*TSLLRIEQNQKRLMKMNSEGASNKC 255
A+EG E+ RR++ H R ++R S YER++ ++ L ++ KRL K+ E A +
Sbjct: 1050 ADEGAEERAIRRRDELHERLHTSRSRKSEYERTITSTELEMKGLAKRLKKVQKEYAELR- 1108
Query: 256 PTNV*ADDSGW 288
T V A +GW
Sbjct: 1109 -TFVVAAKAGW 1118
>ref|NP_935091.1| cell division protein MukB [Vibrio vulnificus
YJ016]|gi|41017313|sp|Q7MJ64|MUKB_VIBVY Chromosome
partition protein mukB (Structural maintenance of
chromosome related protein)|gi|37199230|dbj|BAC95062.1|
cell division protein MukB [Vibrio vulnificus YJ016]
Length = 1487
Score = 35.8 bits (81), Expect = 0.62
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 79 AEEGTEQNPTRRKERSHSRSFIKKNRAS-YERSL*TSLLRIEQNQKRLMKMNSEGASNKC 255
A+EG + RR++ H R ++R S YER+L ++ L +++ KRL K+ E +
Sbjct: 1050 ADEGALERAIRRRDELHERLHTSRSRKSEYERTLTSTELGMKELAKRLKKVQKEYVELR- 1108
Query: 256 PTNV*ADDSGW 288
T V A +GW
Sbjct: 1109 -TFVVAAKAGW 1118
>ref|NP_761003.1| Cell division protein MukB [Vibrio vulnificus
CMCP6]|gi|41017342|sp|Q8DAP8|MUKB_VIBVU Chromosome
partition protein mukB (Structural maintenance of
chromosome related protein)|gi|27361623|gb|AAO10530.1|
Cell division protein MukB [Vibrio vulnificus CMCP6]
Length = 1487
Score = 35.8 bits (81), Expect = 0.62
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 79 AEEGTEQNPTRRKERSHSRSFIKKNRAS-YERSL*TSLLRIEQNQKRLMKMNSEGASNKC 255
A+EG + RR++ H R ++R S YER+L ++ L +++ KRL K+ E +
Sbjct: 1050 ADEGALERAIRRRDELHERLHTSRSRKSEYERTLTSTELGMKELAKRLKKVQKEYVELR- 1108
Query: 256 PTNV*ADDSGW 288
T V A +GW
Sbjct: 1109 -TFVVAAKAGW 1118
>ref|NP_178403.1| Toll-Interleukin-Resistance (TIR) domain-containing protein
[Arabidopsis thaliana]|gi|25370556|pir||E84443 probable
disease resistance protein [imported] - Arabidopsis
thaliana|gi|3461827|gb|AAC32921.1| disease resistance
protein (TIR class), putative [Arabidopsis thaliana]
Length = 204
Score = 35.4 bits (80), Expect = 0.80
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 44 SEADFVKEIIEELKRVRSRIPLEERKDHIPDLSSRKIGHLMSGPCELPYCESSKTRNV 217
SEADF+KE+++ ++ V + I LEE +++ RK CELP + S+T+ +
Sbjct: 152 SEADFIKEVVKAVQCVVATIGLEEEEENHFGKKKRK-----DCKCELPDLKKSRTKKL 204
>ref|NP_178429.1| Toll-Interleukin-Resistance (TIR) domain-containing protein
[Arabidopsis thaliana]|gi|7488090|pir||T02696 probable
disease resistance protein [imported] - Arabidopsis
thaliana|gi|4335767|gb|AAD17444.1| disease resistance
protein (TIR class), putative [Arabidopsis
thaliana]|gi|20197344|gb|AAM15034.1| disease resistance
protein (TIR class), putative [Arabidopsis thaliana]
Length = 203
Score = 34.7 bits (78), Expect = 1.4
Identities = 18/57 (31%), Positives = 32/57 (55%)
Frame = +2
Query: 47 EADFVKEIIEELKRVRSRIPLEERKDHIPDLSSRKIGHLMSGPCELPYCESSKTRNV 217
EADF+KE+++ ++ V + I LEE ++H + CELP + S+T+ +
Sbjct: 153 EADFIKEVVKAVQCVVATIGLEEEENHFGKKKRKDC------KCELPDLKKSRTKKL 203
>ref|NP_175170.1| Toll-Interleukin-Resistance (TIR) domain-containing protein
[Arabidopsis thaliana]
Length = 363
Score = 34.7 bits (78), Expect = 1.4
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +2
Query: 44 SEADFVKEIIEELKRVRSRIPLEERKDH 127
SEADF+KEI++E++RV + E+ +DH
Sbjct: 159 SEADFIKEIVKEVERVLATFTSEDTEDH 186
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 120
effective length of database: 402,277,158
effective search space used: 33389004114
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)