BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.018.Contig1
(447 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-contai... 870 0.0
At5g03800.1 68418.m00347 exostosin family protein / pentatr... 36 0.24
At4g11780.1 68417.m01877 hypothetical protein 36 0.24
At4g00950.1 68417.m00128 expressed protein 36 0.24
At3g26760.1 68416.m03347 short-chain dehydrogenase/reductas... 36 0.24
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing protein
Length = 2582
Score = 870 bits (439), Expect = 0.0
Identities = 446/447 (99%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 1 atcagataaaaatt-actttgagagttactgcaaaactataaacccccttatggaagaag 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 atcagataaaaattgactttgagagttactgcaaaactataaacccccttatggaagaag 2195
Query: 60 agcaagatgaggaagaagatagaaaggcagactcttgtcaaagattgaagactcttactg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 agcaagatgaggaagaagatagaaaggcagactcttgtcaaagattgaagactcttactg 2255
Query: 120 gtgaaatctcttcttcaactcagcttagttacctagaagtggaaagaaacttggcaaacg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 gtgaaatctcttcttcaactcagcttagttacctagaagtggaaagaaacttggcaaacg 2315
Query: 180 tttaccttctttaagttattagacacctttccttttgccattttttatgtgaaacttcta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 tttaccttctttaagttattagacacctttccttttgccattttttatgtgaaacttcta 2375
Query: 240 aagaccagtgtgttgtggtgatgttttggccttttgggtttccatccatttgtgtttaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 aagaccagtgtgttgtggtgatgttttggccttttgggtttccatccatttgtgtttaga 2435
Query: 300 tgttcttgttttaactgtttctgaatttgttgttgtgtagttgtattagttgcagccaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2436 tgttcttgttttaactgtttctgaatttgttgttgtgtagttgtattagttgcagccaaa 2495
Query: 360 tagttagcctggccagtgttactgatcttgtttctccaagttttagccatttgggctgta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 tagttagcctggccagtgttactgatcttgtttctccaagttttagccatttgggctgta 2555
Query: 420 ttgtatgtatctatcatattgtaagct 446
|||||||||||||||||||||||||||
Sbjct: 2556 ttgtatgtatctatcatattgtaagct 2582
>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide (PPR)
repeat-containing protein contains Pfam profiles:
PF03016 exostosin family, PF01535 PPR repeat
Length = 4331
Score = 36.2 bits (18), Expect = 0.24
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 53 gaagaagagcaagatgaggaagaaga 78
|||||||| ||||||||||||||||
Sbjct: 197 gaagaagaagaagatgaggaagaaga 172
>At4g11780.1 68417.m01877 hypothetical protein
Length = 1422
Score = 36.2 bits (18), Expect = 0.24
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 53 gaagaagagcaagatgaggaagaaga 78
||||||||| | ||||||||||||||
Sbjct: 689 gaagaagagaacgatgaggaagaaga 664
>At4g00950.1 68417.m00128 expressed protein
Length = 1242
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 342 gtattagttgcagccaaa 359
||||||||||||||||||
Sbjct: 750 gtattagttgcagccaaa 767
>At3g26760.1 68416.m03347 short-chain dehydrogenase/reductase (SDR) family protein
similar to sex determination protein tasselseed 2
SP:P50160 from [Zea mays]
Length = 1228
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 261 tgttttggccttttgggt 278
||||||||||||||||||
Sbjct: 1016 tgttttggccttttgggt 1033
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,629
Number of Sequences: 29161
Number of extensions: 22629
Number of successful extensions: 2127
Number of sequences better than 10.0: 74
length of query: 447
length of database: 44,058,232
effective HSP length: 17
effective length of query: 430
effective length of database: 43,562,495
effective search space: 18731872850
effective search space used: 18731872850
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)