BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.017.Contig1
(535 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24190.1 68414.m03051 paired amphipathic helix repeat-co... 1045 0.0
At1g70060.1 68414.m08061 paired amphipathic helix repeat-co... 70 2e-11
At4g13880.1 68417.m02150 leucine-rich repeat family protein... 40 0.019
At5g40300.1 68418.m04888 integral membrane protein, putativ... 38 0.074
At4g13810.1 68417.m02140 disease resistance family protein ... 38 0.074
>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing protein
similar to transcription co-repressor Sin3 [Xenopus
laevis] GI:4960210; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 4362
Score = 1045 bits (527), Expect = 0.0
Identities = 534/535 (99%), Gaps = 1/535 (0%)
Strand = Plus / Plus
Query: 1 aggaacaagcgcaaagtttgtcgtgaagatgaacagttatacagcacagatgaagttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3829 aggaacaagcgcaaagtttgtcgtgaagatgaacagttatacagcacagatgaagttaag 3888
Query: 61 atcaaaaatggttttggagtgtaagatagcttgcggttcttcaaaggtctcctatgtact 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3889 atcaaaaatggttt-ggagtgtaagatagcttgcggttcttcaaaggtctcctatgtact 3947
Query: 121 agaaacagaagatttgttggtgcgagttaaaaagagaagaaaaactttgtgccacaatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3948 agaaacagaagatttgttggtgcgagttaaaaagagaagaaaaactttgtgccacaatca 4007
Query: 181 ggattcttgggtaaggcaaatgaggttacaatattacaaaaataacttcttgtgaccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4008 ggattcttgggtaaggcaaatgaggttacaatattacaaaaataacttcttgtgaccagc 4067
Query: 241 ctgtaacaatctggaagaaggataccaaatcaactcaacttgttcattcactctccaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4068 ctgtaacaatctggaagaaggataccaaatcaactcaacttgttcattcactctccaact 4127
Query: 301 taacagagacaaaacaaaaacaaaagtggcaattctccattgttgacttcaccggataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4128 taacagagacaaaacaaaaacaaaagtggcaattctccattgttgacttcaccggataga 4187
Query: 361 gccaaactgcattctctatcttcataagaagaagaagcaacaaaggatttggctttttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4188 gccaaactgcattctctatcttcataagaagaagaagcaacaaaggatttggctttttgt 4247
Query: 421 tgtctgtgactgaaaaagaaaacaatcactcacaaaaatgatgttacatatgtaaagttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4248 tgtctgtgactgaaaaagaaaacaatcactcacaaaaatgatgttacatatgtaaagttt 4307
Query: 481 gtctttattcactctcttgttgtaaagttttgtatgttgttgtaacatttatcaa 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4308 gtctttattcactctcttgttgtaaagttttgtatgttgttgtaacatttatcaa 4362
>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing protein
similar to transcription co-repressor Sin3 [Xenopus
laevis] GI:4960210; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 4818
Score = 69.9 bits (35), Expect = 2e-11
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 49 gatgaagttaagatcaaaaatggttttggagtgtaagatagcttgcggttcttcaaaggt 108
|||||||||||||| | |||||||| ||| ||||||||| | ||| |||||||||||||
Sbjct: 3871 gatgaagttaagattattaatggttt-ggaatgtaagataacctgcagttcttcaaaggt 3929
Query: 109 ctcctatgtactaga 123
|||||||||| ||||
Sbjct: 3930 ctcctatgtattaga 3944
>At4g13880.1 68417.m02150 leucine-rich repeat family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-0B
[Lycopersicon esculentum] gi|3894387|gb|AAC78593
Length = 2525
Score = 40.1 bits (20), Expect = 0.019
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 386 aagaagaagaagcaacaaag 405
||||||||||||||||||||
Sbjct: 2380 aagaagaagaagcaacaaag 2399
>At5g40300.1 68418.m04888 integral membrane protein, putative MtN24 gene,
Medicago truncatula, EMBL:MTY15290; contains Pfam
PF04535 : Domain of unknown function (DUF588); contains
4 transmembrane domains; similar to putative ethylene
responsive element binding protein (GI:22135858)
[Arabidopsis thaliana]
Length = 990
Score = 38.2 bits (19), Expect = 0.074
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 381 ttcataagaagaagaagcaacaa 403
|||| ||||||||||||||||||
Sbjct: 29 ttcagaagaagaagaagcaacaa 51
>At4g13810.1 68417.m02140 disease resistance family protein / LRR family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to disease resistance protein
[Lycopersicon esculentum] gi|3894383|gb|AAC78591
Length = 2226
Score = 38.2 bits (19), Expect = 0.074
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 387 agaagaagaagcaacaaag 405
|||||||||||||||||||
Sbjct: 2046 agaagaagaagcaacaaag 2064
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,957
Number of Sequences: 29161
Number of extensions: 36957
Number of successful extensions: 3408
Number of sequences better than 10.0: 109
length of query: 535
length of database: 44,058,232
effective HSP length: 17
effective length of query: 518
effective length of database: 43,562,495
effective search space: 22565372410
effective search space used: 22565372410
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)